Information for 6-YCAGMWWGTRCA (Motif 6)


Reverse Opposite:

p-value:1e-5
log p-value:-1.312e+01
Information Content per bp:1.839
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif69.9
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets105.0 +/- 27.2bp
Average Position of motif in Background106.9 +/- 74.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZSCAN4/MA1155.1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---YCAGMWWGTRCA
TTTTCAGTGTGTGCA

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--YCAGMWWGTRCA-
GVACAGNMTGTYCTB

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--YCAGMWWGTRCA
DCTCAGCAGG----

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--YCAGMWWGTRCA-
GRACAGWMTGTYCTB

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--YCAGMWWGTRCA
RHHCAGAGAGGB--

PB0026.1_Gm397_1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:YCAGMWWGTRCA------
-NNGTATGTGCACATNNN

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:7
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----YCAGMWWGTRCA---
NGAGGTCANNGAGTTCANNN

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---YCAGMWWGTRCA-
AGNACAGNCTGTTCTN

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---YCAGMWWGTRCA-
AGNACANNNTGTNCTN

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:YCAGMWWGTRCA
ACAGGAAGTG--