Information for 7-BGADTTATGTGC (Motif 7)


Reverse Opposite:

p-value:1e-5
log p-value:-1.284e+01
Information Content per bp:1.763
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif22.22%
Number of Background Sequences with motif280.1
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets103.8 +/- 62.6bp
Average Position of motif in Background103.0 +/- 69.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:BGADTTATGTGC----
NNNNTTGTGTGCTTNN

NKX3-2/MA0122.2/Jaspar

Match Rank:2
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:BGADTTATGTGC-
----TTAAGTGGN

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:BGADTTATGTGC-
----TTAAGTGGT

ISL2/MA0914.1/Jaspar

Match Rank:4
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:BGADTTATGTGC
----TTAAGTGC

PB0104.1_Zscan4_1/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:BGADTTATGTGC-------
--NTNTATGTGCACATNNN

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:BGADTTATGTGC-----
NTNNTTAAGTGGTTANN

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:BGADTTATGTGC-----
NTNNTTAAGTGGNTNAN

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:BGADTTATGTGC-
---NTCAAGTGGN

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:BGADTTATGTGC--
----TTAAGTGCTT

PB0026.1_Gm397_1/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:BGADTTATGTGC-------
--NNGTATGTGCACATNNN