Information for 1-CCCTTGTS (Motif 9)


Reverse Opposite:

p-value:1e-4
log p-value:-1.137e+01
Information Content per bp:1.669
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif83.33%
Number of Background Sequences with motif16376.0
Percentage of Background Sequences with motif32.20%
Average Position of motif in Targets97.2 +/- 52.3bp
Average Position of motif in Background100.2 +/- 68.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.46
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CCCTTGTS
CCTTTGTT

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CCCTTGTS
CCWTTGTY

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CCCTTGTS--
CCWTTGTYYB

PB0200.1_Zfp187_2/Jaspar

Match Rank:4
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---CCCTTGTS-----
GAGCCCTTGTCCCTAA

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.76
Offset:0
Orientation:forward strand
Alignment:CCCTTGTS--
CCTTTGTTTT

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----CCCTTGTS
AGGVNCCTTTGT-

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CCCTTGTS-
NCCATTGTTY

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CCCTTGTS--
CCATTGTTTT

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CCCTTGTS--
YCTTTGTTCC

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CCCTTGTS-
NCCATTGTTC