Information for 10-AAGAAAGCTTAT (Motif 12)


Reverse Opposite:

p-value:1e-4
log p-value:-9.433e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets24.0 +/- 0.0bp
Average Position of motif in Background169.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:AAGAAAGCTTAT
----AAGCTTG-

PROX1/MA0794.1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AAGAAAGCTTAT
CAAGACGCCTTA-

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AAGAAAGCTTAT---
----AAGGATATNTN

SIX2/MA1119.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAGAAAGCTTAT--
AACTGAAACCTGATAC

PB0023.1_Gata6_1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AAGAAAGCTTAT-------
--NNANTCTTATCTNNNNN

SOX10/MA0442.2/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAGAAAGCTTAT
AAAACAAAGAA---

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AAGAAAGCTTAT--
--GWAAYHTGAKMC

SIX1/MA1118.1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AAGAAAGCTTAT-
--GTAACCTGATA

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AAGAAAGCTTAT
ANGNAAAGGTCA-

Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer

Match Rank:10
Score:0.55
Offset:6
Orientation:forward strand
Alignment:AAGAAAGCTTAT----
------YCTTATCTBN