Information for 19-GAGCAAGCAACT (Motif 19)


Reverse Opposite:

p-value:1e-3
log p-value:-8.740e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets142.0 +/- 0.0bp
Average Position of motif in Background24.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GAGCAAGCAACT-
-AGGAAACAGCTG

MYB/MA0100.3/Jaspar

Match Rank:2
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GAGCAAGCAACT---
-----ACCAACTGTC

Dux/MA0611.1/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GAGCAAGCAACT
--CCAATCAA--

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAGCAAGCAACT
TBGCACGCAA--

PBX1/MA0070.1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAGCAAGCAACT
CCATCAATCAAA-

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GAGCAAGCAACT--
---AAGGCAAGTGT

ASCL1/MA1100.1/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GAGCAAGCAACT----
---GCAGCAGCTGGCG

Hmx3/MA0898.1/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GAGCAAGCAACT-------
--ACAAGCAATTAAAGAAT

PH0043.1_Hmx3/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GAGCAAGCAACT-------
--ACAAGCAATTAAAGAAT

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GAGCAAGCAACT
TGAGTCAGCA---