Information for 1-ACAGCACT (Motif 2)


Reverse Opposite:

p-value:1e-5
log p-value:-1.256e+01
Information Content per bp:1.922
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif62.50%
Number of Background Sequences with motif3697.7
Percentage of Background Sequences with motif3.70%
Average Position of motif in Targets94.3 +/- 44.1bp
Average Position of motif in Background102.2 +/- 86.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-ACAGCACT
CACAGN---

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ACAGCACT---
-AAGCACTTAA

MSC/MA0665.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ACAGCACT-
AACAGCTGTT

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----ACAGCACT-----
NNNNTGAGCACTGTNNG

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ACAGCACT---
-MRSCACTYAA

Tcf21/MA0832.1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ACAGCACT---
NCAACAGCTGTTGC

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ACAGCACT
TTGACAGC---

Rhox11/MA0629.1/Jaspar

Match Rank:8
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------ACAGCACT--
TCNNTTTACAGCGNNNT

PH0157.1_Rhox11_1/Jaspar

Match Rank:9
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------ACAGCACT--
TCNNTTTACAGCGNNNT

PH0158.1_Rhox11_2/Jaspar

Match Rank:10
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------ACAGCACT--
TCNCTTTACAGCGNNNT