Information for 20-GTGCCAAGAAGT (Motif 20)


Reverse Opposite:

p-value:1e-3
log p-value:-8.740e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets154.0 +/- 0.0bp
Average Position of motif in Background126.5 +/- 9.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GTGCCAAGAAGT
NNTGCCAAGNN--

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GTGCCAAGAAGT
GGTGCCAAGT---

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GTGCCAAGAAGT
CGTGCCAAG----

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTGCCAAGAAGT
TTGCCAAG----

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GTGCCAAGAAGT
ATTTCCAAGAA--

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GTGCCAAGAAGT
ATGCCAACC---

Stat4/MA0518.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GTGCCAAGAAGT--
TTTCCAGGAAATGG

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTGCCAAGAAGT
NNCTTCCNGGAAGN

STAT3/MA0144.2/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTGCCAAGAAGT
TTTCCCAGAAN-

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GTGCCAAGAAGT-
---ACAGGAAGTG