Information for 21-AGCAGTTTTATT (Motif 21)


Reverse Opposite:

p-value:1e-3
log p-value:-8.740e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.0 +/- 0.0bp
Average Position of motif in Background168.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:AGCAGTTTTATT-----
-NNANTTTTATTGGNNN

HOXD13/MA0909.1/Jaspar

Match Rank:2
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:AGCAGTTTTATT--
----NTTTTATTGG

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:AGCAGTTTTATT--
----TTTTTATTGG

HOXB13/MA0901.1/Jaspar

Match Rank:4
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:AGCAGTTTTATT--
----NTTTTATTGG

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGCAGTTTTATT-----
NTNAATTTTATTGNATT

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:AGCAGTTTTATT--
-----TTTTATTGC

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:AGCAGTTTTATT--
----NTTTTATGAC

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:AGCAGTTTTATT---
----NTTTTATTACN

PH0057.1_Hoxb13/Jaspar

Match Rank:9
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGCAGTTTTATT-----
-NNAATTTTATTGGNTN

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:AGCAGTTTTATT---
-----TTTTATTRGN