Information for 5-CGAAGTCTAT (Motif 25)


Reverse Opposite:

p-value:1e-3
log p-value:-8.335e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets196.0 +/- 0.0bp
Average Position of motif in Background121.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGAAGTCTAT
AAAAGTCAA-

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CGAAGTCTAT---
--AAGGATATNTN

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGAAGTCTAT
NGAAGC----

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CGAAGTCTAT-
---RRTCAATA

PB0134.1_Hnf4a_2/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CGAAGTCTAT---
GGCAAAAGTCCAATAA

Hnf4a/MA0114.3/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CGAAGTCTAT-
GGGGTCAAAGTCCAAT

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CGAAGTCTAT
--TWGTCTGV

PB0161.1_Rxra_2/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CGAAGTCTAT---
TCGCGAAGGTTGTACT

Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer

Match Rank:9
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CGAAGTCTAT
AMCMGGAAGT----

ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CGAAGTCTAT
ACVAGGAAGT----