Information for 7-CAAGTCCGAC (Motif 27)


Reverse Opposite:

p-value:1e-3
log p-value:-8.047e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets76.0 +/- 0.0bp
Average Position of motif in Background170.4 +/- 3.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CAAGTCCGAC--
GGCAAAAGTCCAATAA

PB0114.1_Egr1_2/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CAAGTCCGAC------
NNAGTCCCACTCNNNN

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CAAGTCCGAC
NTCAAGGTCA--

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAAGTCCGAC
GCACGTNC---

NKX2-8/MA0673.1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CAAGTCCGAC
NTCAAGTGG---

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAAGTCCGAC
CAAGGHCANV

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CAAGTCCGAC-
-GAGSCCGAGC

HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CAAGTCCGAC
TWVGGTCCGC-

HINFP/MA0131.2/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CAAGTCCGAC-
CAACGTCCGCGG

PB0115.1_Ehf_2/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CAAGTCCGAC---
TAGTATTTCCGATCTT