Information for 10-AGTGAGCCGG (Motif 29)


Reverse Opposite:

p-value:1e-3
log p-value:-7.824e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.0 +/- 0.0bp
Average Position of motif in Background78.8 +/- 50.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0153.1_Nr2f2_2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AGTGAGCCGG----
NNNNTGACCCGGCGCG

PB0157.1_Rara_2/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGTGAGCCGG----
NNCNTGACCCCGCTCT

RHOXF1/MA0719.1/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGTGAGCCGG
-ATAATCCC-

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGTGAGCCGG
---CAGCC--

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGTGAGCCGG
AGCGCGCC--

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGTGAGCCGG
TGAGTCAGCA--

TFCP2/MA0145.3/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AGTGAGCCGG---
---AAACCGGTTT

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----AGTGAGCCGG-
NNGCGTGTGTGCNGCN

PH0151.1_Pou6f1_1/Jaspar

Match Rank:9
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------AGTGAGCCGG-
GACGATAATGAGCTTGC

PB0077.1_Spdef_1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGTGAGCCGG------
AANNATCCGGATGTNN