Information for 2-CCACMSARGGCC (Motif 3)


Reverse Opposite:

p-value:1e-4
log p-value:-9.719e+00
Information Content per bp:1.888
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif147.4
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets101.0 +/- 70.1bp
Average Position of motif in Background99.9 +/- 77.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PLAG1/MA0163.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCACMSARGGCC--
CCCCCTTGGGCCCC

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCACMSARGGCC
AGACCACCCASR---

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCACMSARGGCC
GGACCACCCACG---

ZNF354C/MA0130.1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCACMSARGGCC
ATCCAC--------

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCACMSARGGCC
NWAACCACADNN----

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CCACMSARGGCC-
-----CTAGGCCT

RUNX1/MA0002.2/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCACMSARGGCC
AAACCACAGAN----

GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCACMSARGGCC
NGGCCTCCCAGGGAG

ZBTB7C/MA0695.1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCACMSARGGCC
GCGACCACCGAA----

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCACMSARGGCC
CCATATATGGNA