Information for 11-CGAGAGATCG (Motif 30)


Reverse Opposite:

p-value:1e-3
log p-value:-7.824e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets171.0 +/- 0.0bp
Average Position of motif in Background135.6 +/- 37.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CGAGAGATCG
TTGACCGAGAATTCC

PB0140.1_Irf6_2/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CGAGAGATCG
NNNACCGAGAGTNNN

PB0126.1_Gata5_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CGAGAGATCG----
GACAGAGATATCAGTGT

PB0138.1_Irf4_2/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CGAGAGATCG
GNNACCGAGAATNNN

ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CGAGAGATCG
GTTCTCGCGAGANCC

ZBTB33/MA0527.1/Jaspar

Match Rank:6
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------CGAGAGATCG
NAGNTCTCGCGAGAN--

GFX(?)/Promoter/Homer

Match Rank:7
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CGAGAGATCG
ATTCTCGCGAGA---

PB0127.1_Gata6_2/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CGAGAGATCG----
NGCTGCGATATCGNCGC

NEUROD1/MA1109.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CGAGAGATCG---
GGACAGATGGCAG

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CGAGAGATCG-
-AACAGATGGC