Information for 12-AGCAACCCGC (Motif 31)


Reverse Opposite:

p-value:1e-3
log p-value:-7.642e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets149.0 +/- 0.0bp
Average Position of motif in Background88.1 +/- 17.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------AGCAACCCGC
CCGCATAGCAACGGA-

PB0024.1_Gcm1_1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGCAACCCGC------
TCGTACCCGCATCATT

GCM2/MA0767.1/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:AGCAACCCGC---
---TACCCGCATN

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------AGCAACCCGC
TACCATAGCAACGGT-

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.62
Offset:-10
Orientation:forward strand
Alignment:----------AGCAACCCGC---
TGTGACCCTTAGCAACCGATTAA

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AGCAACCCGC
SCCTAGCAACAG--

GCM1/MA0646.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGCAACCCGC---
--GTACCCGCATN

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:8
Score:0.59
Offset:-8
Orientation:forward strand
Alignment:--------AGCAACCCGC
TGTTKCCTAGCAACM---

RUNX2/MA0511.2/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGCAACCCGC--
---AAACCGCAA

TFDP1/MA1122.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGCAACCCGC--
-NNTTCCCGCCN