Information for 20-CATAATTGGT (Motif 34)


Reverse Opposite:

p-value:1e-3
log p-value:-7.237e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif9.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets146.0 +/- 0.0bp
Average Position of motif in Background99.6 +/- 68.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nobox/MA0125.1/Jaspar

Match Rank:1
Score:0.80
Offset:2
Orientation:forward strand
Alignment:CATAATTGGT
--TAATTGGT

MSX2/MA0708.1/Jaspar

Match Rank:2
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CATAATTGGT
-NTAATTGG-

PH0005.1_Barhl1/Jaspar

Match Rank:3
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--CATAATTGGT----
GNNTTAATTGGTTGTT

PH0006.1_Barhl2/Jaspar

Match Rank:4
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--CATAATTGGT----
NNNTTAATTGGTTTTT

MSX1/MA0666.1/Jaspar

Match Rank:5
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:CATAATTGGT
-NTAATTGG-

PH0107.1_Msx2/Jaspar

Match Rank:6
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---CATAATTGGT----
ANCGCTAATTGGTCTNN

Msx3/MA0709.1/Jaspar

Match Rank:7
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CATAATTGGT
-NTAATTGN-

GBX2/MA0890.1/Jaspar

Match Rank:8
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CATAATTGGT
NNTAATTGNN

PH0108.1_Msx3/Jaspar

Match Rank:9
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CATAATTGGT----
NNNTTAATTGGTTTTN

Dlx4/MA0881.1/Jaspar

Match Rank:10
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CATAATTGGT
-NTAATTGN-