Information for 2-TCGAGCCAAA (Motif 4)


Reverse Opposite:

p-value:1e-4
log p-value:-9.433e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets130.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TCGAGCCAAA
-CGTGCCAAG

E2F8/MA0865.1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TCGAGCCAAA
TTTCCCGCCAAA

E2F(E2F)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCGAGCCAAA-
TTCGCGCGAAAA

E2F7/MA0758.1/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TCGAGCCAAA-
TTTTCCCGCCAAAA

E2F1/MA0024.3/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TCGAGCCAAA
TTTGGCGCCAAA

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCGAGCCAAA-
-GGTGCCAAGT

POL001.1_MTE/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TCGAGCCAAA-------
TTTCGAGCGGAACGGTCGC

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TCGAGCCAAA
GRTGMTRGAGCC---

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TCGAGCCAAA--
ACTAGCCAATCA

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TCGAGCCAAA
--CAGCC---