Information for 3-TTAAGTAACG (Motif 5)


Reverse Opposite:

p-value:1e-4
log p-value:-9.433e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets134.0 +/- 0.0bp
Average Position of motif in Background152.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIL3/MA0025.1/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:TTAAGTAACG-
TTATGTAACAT

TEF/MA0843.1/Jaspar

Match Rank:2
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TTAAGTAACG
NGTTACGTAATN

DBP/MA0639.1/Jaspar

Match Rank:3
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--TTAAGTAACG
NGTTACGTAATN

HLF/MA0043.2/Jaspar

Match Rank:4
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--TTAAGTAACG
NGTTACGTAANN

PH0173.1_Uncx/Jaspar

Match Rank:5
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----TTAAGTAACG--
CATAATTAATTAACGCG

PH0011.1_Alx1_2/Jaspar

Match Rank:6
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----TTAAGTAACG--
NNNAATTAATTAANGNG

PH0128.1_Otp/Jaspar

Match Rank:7
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----TTAAGTAACG--
CGTAATTAATTAATTGG

PH0051.1_Hoxa4/Jaspar

Match Rank:8
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----TTAAGTAACG--
GATTATTAATTAACTTG

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:9
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TTAAGTAACG
RTTATGYAAB-

PH0059.1_Hoxb4/Jaspar

Match Rank:10
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----TTAAGTAACG--
GNTNATTAATTAACNNG