Information for 7-AGTATGCTGGAT (Motif 9)


Reverse Opposite:

p-value:1e-4
log p-value:-9.433e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets166.0 +/- 0.0bp
Average Position of motif in Background133.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGTATGCTGGAT---
---ATGATKGATGRC

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:2
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AGTATGCTGGAT--
----TGATKGATGR

PBX1/MA0070.1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGTATGCTGGAT--
--TTTGATTGATGN

PB0024.1_Gcm1_1/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGTATGCTGGAT---
NNNNATGCGGGTNNNN

GCM2/MA0767.1/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AGTATGCTGGAT
--TATGCGGGTA

PB0042.1_Mafk_1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGTATGCTGGAT-
TAAAAATGCTGACTT

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGTATGCTGGAT---
RGSMTBCTGGGAAAT

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AGTATGCTGGAT--
AAAWWTGCTGACWWD

GCM1/MA0646.1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AGTATGCTGGAT-
--CATGCGGGTAC

Mafb/MA0117.2/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGTATGCTGGAT
AAAATGCTGACT