Information for 14-CTGCAAAGTAAG (Motif 15)

A G T C A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C T G A G T C C G T A A C T G
p-value:1e-38
log p-value:-8.804e+01
Information Content per bp:1.530
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif4.08%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets126.5 +/- 8.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTGCAAAGTAAG
NNTGCCAAGNN--
 A C G T A G T C A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C T G
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CTGCAAAGTAAG---
----CAGGTAAGTAT
 A G T C A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTGCAAAGTAAG-----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T A G T C A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CTGCAAAGTAAG-----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T A G T C A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

POU5F1/MA1115.1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTGCAAAGTAAG
ATATGCAAATT---
 A C G T A C G T A G T C A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C T G
C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTGCAAAGTAAG
ATATGCAAATNNN-
 A C G T A C G T A G T C A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C T G
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTGCAAAGTAAG
GGTGCCAAGT---
 A C G T A G T C A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C T G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CTGCAAAGTAAG
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C T G
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTGCAAAGTAAG
TATGCWAATBAV-
 A C G T A G T C A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C T G
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTGCAAAGTAAG
WATGCAAATGAG-
 A C G T A G T C A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C T G
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T