Information for 19-MAVTCCRT (Motif 42)

G T A C C G T A T G C A A C G T A G T C A G T C T C A G A C G T
Reverse Opposite:
C G T A A G T C A C T G A C T G G T C A A C G T A C G T C A T G
p-value:1e-17
log p-value:-3.942e+01
Information Content per bp:1.761
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif19.44%
Number of Background Sequences with motif2676.5
Percentage of Background Sequences with motif5.55%
Average Position of motif in Targets80.8 +/- 37.6bp
Average Position of motif in Background99.3 +/- 61.6bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0035.1_Gsc/Jaspar

Match Rank:1
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------MAVTCCRT---
AATCGTTAATCCCTTTA
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A T G C A A C G T A G T C A G T C T C A G A C G T A C G T A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--MAVTCCRT
NYTAATCCYB
 A C G T A C G T G T A C C G T A T G C A A C G T A G T C A G T C T C A G A C G T
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

PH0126.1_Obox6/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---MAVTCCRT----
CNATAATCCGNTTNT
 A C G T A C G T A C G T G T A C C G T A T G C A A C G T A G T C A G T C T C A G A C G T A C G T A C G T A C G T A C G T
T A G C C T G A G C T A C G A T C G T A C G T A A C G T G T A C A G T C A T C G G A C T C G A T G A C T C G A T C A G T

PH0138.1_Pitx2/Jaspar

Match Rank:4
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------MAVTCCRT---
GNNNATTAATCCCTNCN
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A T G C A A C G T A G T C A G T C T C A G A C G T A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--MAVTCCRT
CTTAATCCC-
 A C G T A C G T G T A C C G T A T G C A A C G T A G T C A G T C T C A G A C G T
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T

PH0130.1_Otx2/Jaspar

Match Rank:6
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------MAVTCCRT---
GANNATTAATCCCTNNN
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A T G C A A C G T A G T C A G T C T C A G A C G T A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

GSC/MA0648.1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--MAVTCCRT
GCTAATCCCC
 A C G T A C G T G T A C C G T A T G C A A C G T A G T C A G T C T C A G A C G T
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

PH0129.1_Otx1/Jaspar

Match Rank:8
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------MAVTCCRT---
NNNAATTAATCCCCNCN
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A T G C A A C G T A G T C A G T C T C A G A C G T A C G T A C G T A C G T
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T

OTX1/MA0711.1/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-MAVTCCRT
TTAATCCG-
 A C G T G T A C C G T A T G C A A C G T A G T C A G T C T C A G A C G T
G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:10
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----MAVTCCRT----
NNNATTAATCCGNTTNA
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A T G C A A C G T A G T C A G T C T C A G A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A