{
    "major_version": 6,
    "minor_version": 0,
    "patch_version": 0,
    "run_name": "SR010796_Rentschler-Ng_20260311",
    "run_start_time": "2026-03-11T18:56:42Z",
    "region_name": "83846_SN426-2",
    "preservation_method": "ffpe",
    "num_cells": 51511,
    "transcripts_per_cell": 186,
    "transcripts_per_100um": 227.03884454274356,
    "region_area": 29512091.568906248,
    "total_cell_area": 5654204.691648345,
    "thickness_of_high_quality_decoded_transcripts": 6.764400666650462,
    "non_zero_matrix_entries": 8205113,
    "nuclear_transcripts_per_100um": 424.0260571144747,
    "num_transcripts": 22967605,
    "num_transcripts_high_quality": 19417177,
    "fraction_transcripts_assigned": 0.6611280826249871,
    "segmented_cell_stain_frac": 0.9863330162489565,
    "segmented_cell_boundary_frac": 0.45223350352351926,
    "segmented_cell_interior_frac": 0.5340995127254373,
    "segmented_cell_nuc_expansion_frac": 0.013666983751043466,
    "segmented_nucleus_focus_count": 34694,
    "segmented_nucleus_zstack_count": 3191,
    "segmented_nucleus_focus_frac": 0.9157714134881879,
    "segmented_nucleus_zstack_frac": 0.08422858651181206,
    "imported_cell_frac": 0.0,
    "cassette_name": "83846",
    "slide_id": "0083846",
    "panel_type": "predesigned",
    "panel_design_id": "mAtlas_v1",
    "panel_predesigned_id": "",
    "panel_designer_version": "1.0.0",
    "panel_name": "Xenium Mouse 5K Pan Tissue & Pathways Panel",
    "panel_organism": "Mouse",
    "panel_tissue_type": "Multi",
    "panel_num_targets_predesigned": 5006,
    "panel_num_targets_custom": 0,
    "chemistry_version": "v2",
    "pixel_size": 0.2125,
    "instrument_sn": "XETG00113",
    "instrument_sw_version": "4.0.1.4",
    "analysis_sw_version": "xenium-4.0.1.0",
    "analysis_uuid": "f3ecd96b-6e2f-43ff-a4b3-c686175e9338",
    "experiment_uuid": "3e261825-1993-45d4-b3d3-ae6b799699b5",
    "cassette_uuid": "3e63446b-6627-41d1-8699-3a9c2430b04f",
    "roi_uuid": "87b1047b-e024-4c6d-9b8e-b73c2d3ae827",
    "z_step_size": 3.0,
    "well_uuid": "def_9e5e8671_rec_04d1d6d6",
    "calibration_uuid": "92858d70-fde3-4692-a7b2-60569f740403",
    "images": {
        "morphology_filepath": "morphology.ome.tif",
        "morphology_focus_filepath": "morphology_focus/ch0000_dapi.ome.tif"
    },
    "xenium_explorer_files": {
        "transcripts_zarr_filepath": "transcripts.zarr.zip",
        "cells_zarr_filepath": "cells.zarr.zip",
        "cell_features_zarr_filepath": "cell_feature_matrix.zarr.zip",
        "analysis_zarr_filepath": "analysis.zarr.zip",
        "analysis_summary_filepath": "analysis_summary.html"
    },
    "segmentation_stain": "Xenium Multi-Tissue Stain",
    "num_protein_targets": 0,
    "protein_subpanel_ids": []
}