process task_id hash native_id module container tag name status exit submit start complete duration realtime %cpu %mem rss vmem peak_rss peak_vmem rchar wchar syscr syscw read_bytes write_bytes attempt workdir scratch queue cpus memory disk time env workflowSummaryMqc 2 7b/76c8eb - - - - workflowSummaryMqc COMPLETED - 1650243021951 1650243022010 1650243022213 262 203 - - - - - - - - - - - - 1 /home/litd/SmartSeq3/work/7b/76c8ebd6b4cdf62393995e36ef0959 - - 1 1073741824 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH outputDocumentation 3 2e/33ec78 59842 - /home/litd/SmartSeq3/singularity_image/python.simg - outputDocumentation COMPLETED 0 1650243021942 1650243022207 1650243025522 3580 898 70.2 0.0 12070912 41816064 12070912 41828352 3321551 998125 744 13 6874112 999424 1 /home/litd/SmartSeq3/work/2e/33ec78aa2227c427f74b5bf0a4ca36 - - 1 2147483648 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH getTaggedSeq 1 e2/aa482f 59829 - /home/litd/SmartSeq3/singularity_image/seqkit.simg V590T10 getTaggedSeq (V590T10) COMPLETED 0 1650243021420 1650243021709 1650243031396 9976 7413 234.3 0.1 205635584 895070208 205635584 895082496 148548636 97270520 18488 1203761 4622336 97271808 1 /home/litd/SmartSeq3/work/e2/aa482fa578db53d9d6146cbed27d49 - - 4 8589934592 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH umiExtraction 4 b5/4b4de3 60519 - /home/litd/SmartSeq3/singularity_image/umiTools.simg V590T10 umiExtraction (V590T10) COMPLETED 0 1650243031798 1650243031897 1650243090699 58901 57161 111.0 0.0 104329216 6613864448 104329216 6795091968 104657852 63579066 8127 109 33455104 63610880 1 /home/litd/SmartSeq3/work/b5/4b4de3a8150bdede45d13ca2ccef25 - - 6 17179869184 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH mergeReads 5 76/afd030 61771 - /home/litd/SmartSeq3/singularity_image/seqkit.simg V590T10 mergeReads (V590T10) COMPLETED 0 1650243091039 1650243091099 1650243141594 50555 48250 107.7 0.1 165830656 894087168 165830656 894099456 1147983261 812718262 53389 1169573 351953920 564748288 1 /home/litd/SmartSeq3/work/76/afd030c04125a061d51c2dc99aa08c - - 4 8589934592 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH trimReads 6 7b/b059bf 63112 - /home/litd/SmartSeq3/singularity_image/cutadapt.simg V590T10 trimReads (V590T10) COMPLETED 0 1650243141729 1650243142196 1650243149521 7792 5751 703.0 0.0 544514048 1794945024 548151296 1798479872 1478844094 1479838799 4960 4087 6092800 91652096 1 /home/litd/SmartSeq3/work/7b/b059bf26f050c9a1e9158129b68030 - - 4 8589934592 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH readAlignment 7 be/712819 64421 - /home/litd/SmartSeq3/singularity_image/star.simg V590T10 readAlignment (V590T10) COMPLETED 0 1650243150120 1650243150221 1650243382848 232728 231019 114.6 13.4 36216086528 37376421888 36216188928 37651599360 33426762771 911551796 417807 58305 4726784 565522432 1 /home/litd/SmartSeq3/work/be/7128197dde8b40d271a9c122d0fd99 - - 8 51539607552 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH readAssignment 8 9d/6f620f 69748 - /home/litd/SmartSeq3/singularity_image/featureCounts.simg V590T10 readAssignment (V590T10) COMPLETED 0 1650243383041 1650243383148 1650243395515 12474 10627 128.8 0.1 201867264 728858624 206512128 795979776 1562310012 115136810 190463 14107 622592 115142656 1 /home/litd/SmartSeq3/work/9d/6f620f11f43054b8002ca4d3966d12 - - 4 8589934592 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH sortAndIndexBam 9 bf/4ab2b5 70403 - /home/litd/SmartSeq3/singularity_image/samtools.simg V590T10 sortAndIndexBam (V590T10) COMPLETED 0 1650243396080 1650243396216 1650243401499 5419 3773 267.4 0.2 421003264 4065640448 446775296 4076584960 137212490 64753593 4564 82 1286144 64798720 1 /home/litd/SmartSeq3/work/bf/4ab2b5f0de17188a4d180683fe4d12 - - 4 8589934592 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH saturationCurves 10 de/855d83 70743 - /home/litd/SmartSeq3/singularity_image/preseq.simg V590T10 saturationCurves (V590T10) COMPLETED 0 1650243401861 1650243401899 1650243414511 12650 10725 140.2 0.0 14442496 6772391936 14442496 6772404224 63229590 11528 8051 1797 3023872 16384 1 /home/litd/SmartSeq3/work/de/855d832e0d9a20d343cc20f259a8f8 - - 8 51539607552 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH bigWig 11 32/fe3fb1 70753 - /home/litd/SmartSeq3/singularity_image/deeptools.simg V590T10 bigWig (V590T10) COMPLETED 0 1650243402003 1650243402199 1650243422352 20349 18102 610.0 0.0 405635072 1394245632 433393664 1420193792 1227615352 8635733 26958 1523 18490368 9998336 1 /home/litd/SmartSeq3/work/32/fe3fb11fecebc82f94bee44d6d8647 - - 8 51539607552 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH separateReads 12 7e/f9a3a5 70785 - /home/litd/SmartSeq3/singularity_image/samtools.simg V590T10 separateReads (V590T10) COMPLETED 0 1650243402415 1650243402599 1650243424784 22369 20599 88.6 0.3 883372032 911609856 883372032 911622144 1323547163 802460323 40167 45316 1510400 802484224 1 /home/litd/SmartSeq3/work/7e/f9a3a5b1352423d857f3b5798ccdd6 - - 6 17179869184 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH countMatrices 13 47/24cdd9 74835 - /home/litd/SmartSeq3/singularity_image/umiTools.simg V590T10_umi countMatrices (V590T10_umi) COMPLETED 0 1650243425256 1650243425291 1650243438491 13235 11560 136.6 0.0 106741760 6616862720 106741760 6796140544 64739915 129617 5641 38 33873920 135168 1 /home/litd/SmartSeq3/work/47/24cdd958f2f119bc96984533f5816d - - 4 8589934592 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH umiPerGeneDist 16 1e/bacb82 78008 - /home/litd/SmartSeq3/singularity_image/R.simg V590T10_umi umiPerGeneDist (V590T10_umi) COMPLETED 0 1650243438609 1650243438692 1650243441616 3007 976 425.9 0.0 6852608 111435776 6852608 111448064 8815185 1423 1121 24 17471488 4096 1 /home/litd/SmartSeq3/work/1e/bacb82ed00f34119fac7a13a356b37 - - 1 2147483648 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH countUMIGenePerCell 18 44/784cfb 78042 - /home/litd/SmartSeq3/singularity_image/R.simg null countUMIGenePerCell (null) COMPLETED 0 1650243438704 1650243438792 1650243441744 3040 1133 284.4 0.0 7925760 111435776 7925760 111448064 8640555 661 1115 25 17393664 8192 1 /home/litd/SmartSeq3/work/44/784cfb5dc95c916da05e11bf2421b6 - - 1 2147483648 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH cellAnalysis 17 f0/492c43 78052 - /home/litd/SmartSeq3/singularity_image/R.simg null cellAnalysis (null) COMPLETED 0 1650243438776 1650243438891 1650243455804 17028 15024 121.4 0.2 563683328 7094808576 563683328 7094820864 58519811 238925 8548 127 80561152 274432 1 /home/litd/SmartSeq3/work/f0/492c435353dd14823741500250d4b2 - - 6 17179869184 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH geneSaturation 19 f6/ed9fcf 81145 - /home/litd/SmartSeq3/singularity_image/R.simg - geneSaturation COMPLETED 0 1650243455943 1650243456005 1650243465649 9706 7535 150.9 0.1 379494400 6904782848 379494400 6904795136 41745419 1908 4382 38 59343872 4096 1 /home/litd/SmartSeq3/work/f6/ed9fcff27c04eee12f0155f36f5c5d - - 4 8589934592 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH genebodyCoverage 15 23/3353ff 74862 - /home/litd/SmartSeq3/singularity_image/rseqc.simg V590T10_NonUmi genebodyCoverage (V590T10_NonUmi) COMPLETED 0 1650243425330 1650243425385 1650247122823 3697493 3694623 99.9 0.4 1134096384 7553622016 1134096384 7553634304 833180128258 84489 15016441 45 26152960 45056 1 /home/litd/SmartSeq3/work/23/3353ff8e0b96d2a93198502f8aacea - - 8 51539607552 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH getSoftwareVersions 20 8e/b4a6c5 105777 - /home/litd/SmartSeq3/singularity_image/python.simg - getSoftwareVersions COMPLETED 0 1650247123770 1650247123891 1650247127210 3440 353 43.1 0.0 3203072 15196160 3203072 15208448 548202 927 460 15 2883584 12288 1 /home/litd/SmartSeq3/work/8e/b4a6c580cad2de2b30a11894ed22c2 - - 1 2147483648 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH genebodyCoverage 14 e7/f62cc1 74821 - /home/litd/SmartSeq3/singularity_image/rseqc.simg V590T10_umi genebodyCoverage (V590T10_umi) COMPLETED 0 1650243424965 1650243425285 1650247906194 4481229 4476027 99.9 0.4 1135845376 7555530752 1136594944 7556329472 853032230374 84505 15033050 45 26152960 45056 1 /home/litd/SmartSeq3/work/e7/f62cc12cfb599c5add63d3c80080db - - 8 51539607552 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH multiqc 21 9c/cf82fa 107632 - /home/litd/SmartSeq3/singularity_image/multiqc.simg - multiqc (1) COMPLETED 0 1650247911915 1650247912507 1650247946421 34506 17690 24.6 0.0 109441024 422920192 110559232 475717632 22889985 2391117 7410 649 27948032 2580480 1 /home/litd/SmartSeq3/work/9c/cf82fa8c28349740546b8841c1ba61 - - 4 8589934592 - 14400000 PATH=/home/litd/SmartSeq3/bin:$PATH