ChromHMM Report

Input Directory: binary_output_48
Output Directory: output_48
Number of States: 1
Assembly: mm10
Full ChromHMM command: LearnModel binary_output_48 output_48 1 mm10

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • Mut_DAC_R2_1 Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • Mut_DAC_R2_1 Browser Custom Track Dense File
  • Mut_DAC_R2_1 Browser Custom Track Expanded File

    State Enrichments

    Mut_DAC_R2_1 Enrichments


  • Mut_DAC_R2_1 Overlap Enrichment SVG File
  • Mut_DAC_R2_1 Overlap Enrichment Tab-Delimited Text File

  • Mut_DAC_R2_1_RefSeqTSS_neighborhood Enrichment SVG File
  • Mut_DAC_R2_1_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

  • Mut_DAC_R2_1_RefSeqTES_neighborhood Enrichment SVG File
  • Mut_DAC_R2_1_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File