ChromHMM Report

Input Directory: binary_output_WT2
Output Directory: output_WT2
Number of States: 2
Assembly: mm10
Full ChromHMM command: LearnModel binary_output_WT2 output_WT2 2 mm10

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • WT_2 Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • WT_2 Browser Custom Track Dense File
  • WT_2 Browser Custom Track Expanded File

    State Enrichments

    WT_2 Enrichments


  • WT_2 Overlap Enrichment SVG File
  • WT_2 Overlap Enrichment Tab-Delimited Text File

  • WT_2_RefSeqTSS_neighborhood Enrichment SVG File
  • WT_2_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

  • WT_2_RefSeqTES_neighborhood Enrichment SVG File
  • WT_2_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File