Homer de novo Motif Results (homer_motif/CM_female_up_motifs//)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
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More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 2853
Total background sequences = 94256
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C A T G G A T C A G C T G C T A C G T A C G T A G C T A C G T A G A C T C T G A C T A G G T A C 1e-318-7.340e+0219.85%2.47%45.5bp (60.7bp)Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer(0.985)
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motif file (matrix)
2 C T G A C T A G C T G A C G T A G T A C C G T A A G T C C A G T T G A C G C A T T C A G C A G T 1e-271-6.243e+0228.93%7.05%46.0bp (64.7bp)GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer(0.921)
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motif file (matrix)
3 A G T C C G A T C A T G A G T C G A C T A G T C A G C T A C G T A C T G A T C G A G T C C G T A 1e-135-3.118e+0257.85%35.01%49.5bp (65.1bp)NFIX/MA0671.2/Jaspar(0.940)
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motif file (matrix)
4 C A G T A C G T C T G A A G T C T C A G G A C T T G C A T C G A A G T C G C A T 1e-99-2.290e+0219.53%7.26%49.9bp (62.8bp)NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer(0.936)
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motif file (matrix)
5 C G T A T C A G A G C T A T G C G T C A A G T C T C A G C G A T A C T G T G C A 1e-75-1.749e+0228.96%15.28%51.1bp (64.7bp)MITF/MA0620.4/Jaspar(0.935)
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motif file (matrix)
6 C G T A T C A G A C G T A C T G C G T A T A C G A C G T A G T C C G T A A G C T 1e-38-8.792e+017.08%2.46%50.0bp (65.6bp)Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer(0.976)
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motif file (matrix)
7 G C A T C G A T C G T A G C A T A T G C C G A T A G T C A C T G 1e-34-8.032e+0123.18%14.42%55.7bp (61.5bp)Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer(0.908)
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motif file (matrix)
8 C G T A A C T G A C G T A C G T A C G T A G T C A G T C C T G A 1e-32-7.427e+0130.01%20.55%56.1bp (61.2bp)Nfatc1/MA0624.3/Jaspar(0.961)
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motif file (matrix)
9 G T A C G C A T C T A G A C T G A G T C G T A C A C G T T C A G C T A G G T A C 1e-28-6.548e+0112.90%6.99%50.7bp (66.4bp)ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer(0.706)
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motif file (matrix)
10 C T A G C T G A G A T C C A T G C T A G C G T A C G T A A C G T T C A G G C A T 1e-19-4.440e+010.63%0.02%50.9bp (64.5bp)TEAD2/MA1121.2/Jaspar(0.845)
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motif file (matrix)
11 C T A G A T G C C G A T A C T G T A C G G T A C C G A T C A T G A G C T G T C A T A G C G A T C 1e-18-4.233e+015.93%2.79%54.4bp (67.3bp)ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer(0.679)
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motif file (matrix)
12 G T A C C G A T A C T G A C T G C T G A G C T A C G A T A C T G A G C T A C G T A G T C A G C T 1e-17-4.134e+011.79%0.38%49.3bp (63.2bp)TEAD1/MA0090.4/Jaspar(0.810)
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motif file (matrix)
13 A G T C A G C T A C G T A T C G A C G T C G A T A C G T T C G A A G T C A C G T A C T G A C T G 1e-17-3.973e+010.70%0.04%51.0bp (70.2bp)FOXN3/MA1489.1/Jaspar(0.828)
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motif file (matrix)
14 C A T G A C G T T A C G C G T A A G T C G A T C G A C T A C G T A G C T A G T C 1e-15-3.594e+013.51%1.38%60.8bp (60.5bp)NR4A1/MA1112.3/Jaspar(0.919)
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motif file (matrix)
15 T A G C G A C T G A C T C G T A A T C G C A G T A T G C C G T A C T A G G A T C G C A T T C A G 1e-13-3.205e+010.84%0.10%40.4bp (66.3bp)Tcf12/MA0521.3/Jaspar(0.717)
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motif file (matrix)
16 C A G T A C T G C A T G T G A C C G T A C T A G A T G C A G C T A C T G A C G T A T G C G A T C 1e-13-3.198e+012.31%0.76%49.4bp (64.3bp)MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer(0.704)
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motif file (matrix)
17 * A C T G A C T G A G T C A C G T A G T C G A C T A C G T C T G A C T A G A G T C A G T C G T C A 1e-11-2.551e+010.42%0.02%31.9bp (51.0bp)NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer(0.731)
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motif file (matrix)
18 * A C T G A C T G A C T G C G T A A C G T A G T C A G T C C G T A C G T A A C T G A G T C C G T A 1e-10-2.347e+010.21%0.00%66.0bp (26.7bp)PB0158.1_Rfx3_2/Jaspar(0.612)
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motif file (matrix)
19 * C G T A A G T C A C T G A G T C C T G A A G T C A C G T C T G A 1e-10-2.343e+011.30%0.36%50.2bp (66.1bp)HIF1A/MA1106.2/Jaspar(0.707)
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motif file (matrix)
20 * C G T A A G T C A C T G A C G T A C T G A G T C A C T G A G T C A G T C A G T C 1e-9-2.231e+010.18%0.00%68.8bp (38.8bp)EPAS1/MA2325.1/Jaspar(0.777)
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motif file (matrix)
21 * A C T G A G T C A C T G A C T G A C T G A G T C C T A G A G T C A C T G A C T G A C T G A T G C 1e-9-2.189e+010.25%0.01%40.9bp (55.4bp)KLF3/MA1516.2/Jaspar(0.758)
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motif file (matrix)
22 * A C G T A C T G A C T G C G T A A C T G A G T C A G T C A C T G A G T C C G T A A C T G A G T C 1e-8-1.887e+010.18%0.00%67.3bp (61.3bp)ZNF610/MA1713.2/Jaspar(0.677)
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motif file (matrix)
23 * A C G T A G T C C T G A A G T C C G T A A C G T A C G T A C T G 1e-7-1.835e+011.86%0.77%49.8bp (64.9bp)PB0132.1_Hbp1_2/Jaspar(0.741)
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motif file (matrix)
24 * A C T G A C G T C G T A A T C G G T A C A C G T A G T C A C T G A C T G C T A G 1e-6-1.478e+010.32%0.03%62.3bp (53.0bp)ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer(0.629)
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motif file (matrix)