Information for 2-RGAACABNNTGT (Motif 2)

C T G A C T A G C T G A C G T A A G T C C G T A A C T G G C T A T G A C C G A T A C T G G C A T
Reverse Opposite:
C G T A A G T C C G T A A C T G C G A T T G A C C G A T A C T G A C G T G A C T A G T C G A C T
p-value:1e-4515
log p-value:-1.040e+04
Information Content per bp:1.703
Number of Target Sequences with motif19042.0
Percentage of Target Sequences with motif29.50%
Number of Background Sequences with motif5806.7
Percentage of Background Sequences with motif9.38%
Average Position of motif in Targets100.7 +/- 46.3bp
Average Position of motif in Background100.6 +/- 66.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-RGAACABNNTGT--
VAGRACAKWCTGTYC
 A C G T C T G A C T A G C T G A C G T A A G T C C G T A A C T G G C T A T G A C C G A T A C T G G C A T A C G T A C G T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:2
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-RGAACABNNTGT--
AAGAACATWHTGTTC
 A C G T C T G A C T A G C T G A C G T A A G T C C G T A A C T G G C T A T G A C C G A T A C T G G C A T A C G T A C G T
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:3
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-RGAACABNNTGT--
VAGRACAKNCTGTBC
 A C G T C T G A C T A G C T G A C G T A A G T C C G T A A C T G G C T A T G A C C G A T A C T G G C A T A C G T A C G T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-RGAACABNNTGT---
NAGAACAGNCTGTNCT
 A C G T C T G A C T A G C T G A C G T A A G T C C G T A A C T G G C T A T G A C C G A T A C T G G C A T A C G T A C G T A C G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:RGAACABNNTGT----
AGNACANNNTGTNCTN
 C T G A C T A G C T G A C G T A A G T C C G T A A C T G G C T A T G A C C G A T A C T G G C A T A C G T A C G T A C G T A C G T
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

NR3C2/MA0727.1/Jaspar

Match Rank:6
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-RGAACABNNTGT----
GGGAACACAATGTTCCC
 A C G T C T G A C T A G C T G A C G T A A G T C C G T A A C T G G C T A T G A C C G A T A C T G G C A T A C G T A C G T A C G T A C G T
C A T G C T A G C A T G C G T A T G C A A T G C C T G A G A T C C G T A C T G A G A C T A T C G G A C T G C A T G A T C A G T C G T A C

NR3C1/MA0113.3/Jaspar

Match Rank:7
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-RGAACABNNTGT----
NGGAACATNATGTACCC
 A C G T C T G A C T A G C T G A C G T A A G T C C G T A A C T G G C T A T G A C C G A T A C T G G C A T A C G T A C G T A C G T A C G T
C A T G C T A G C T A G C G T A T G C A T A G C C T G A G A C T G C A T C T G A G A C T A T C G G C A T G C T A G A T C G A T C G A T C

Ar/MA0007.3/Jaspar

Match Rank:8
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-RGAACABNNTGT----
GGGAACACGGTGTACCC
 A C G T C T G A C T A G C T G A C G T A A G T C C G T A A C T G G C T A T G A C C G A T A C T G G C A T A C G T A C G T A C G T A C G T
C T A G C T A G C T A G G C T A G T C A T A G C T C G A A G T C T A C G T C A G G A C T A T C G G C A T C G T A G A T C G A T C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---RGAACABNNTGT
CCAGGAACAG-----
 A C G T A C G T A C G T C T G A C T A G C T G A C G T A A G T C C G T A A C T G G C T A T G A C C G A T A C T G G C A T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

ZNF341/MA1655.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-RGAACABNNTGT
GGGAACAGCCAC-
 A C G T C T G A C T A G C T G A C G T A A G T C C G T A A C T G G C T A T G A C C G A T A C T G G C A T
C A T G C T A G T A C G T G C A C T G A A T G C T C G A A T C G A T G C G T A C T C G A T A G C A C G T