Information for 8-CTGCCAAR (Motif 4)

A G T C A C G T A C T G A T G C A G T C C G T A C T G A C T A G
Reverse Opposite:
G A T C A G C T A C G T A C T G A T C G A G T C C G T A C T A G
p-value:1e-913
log p-value:-2.104e+03
Information Content per bp:1.802
Number of Target Sequences with motif16083.0
Percentage of Target Sequences with motif24.91%
Number of Background Sequences with motif9346.0
Percentage of Background Sequences with motif15.10%
Average Position of motif in Targets99.9 +/- 54.9bp
Average Position of motif in Background99.0 +/- 64.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:forward strand
Alignment:CTGCCAAR
TTGCCAAG
 A G T C A C G T A C T G A T G C A G T C C G T A C T G A C T A G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAAR-
GGTGCCAAGT
 A C G T A G T C A C G T A C T G A T G C A G T C C G T A C T G A C T A G A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAAR
CGTGCCAAG
 A C G T A G T C A C G T A C T G A T G C A G T C C G T A C T G A C T A G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.2/Jaspar

Match Rank:4
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAAR--
NNTGCCAAGNN
 A C G T A G T C A C G T A C T G A T G C A G T C C G T A C T G A C T A G A C G T A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:5
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CTGCCAAR-
-TGCCAGCB
 A G T C A C G T A C T G A T G C A G T C C G T A C T G A C T A G A C G T
A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CTGCCAAR-
ATGCCAACC
 A G T C A C G T A C T G A T G C A G T C C G T A C T G A C T A G A C G T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAAR
RHTGWCAR-
 A C G T A G T C A C G T A C T G A T G C A G T C C G T A C T G A C T A G
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAAR
GCTGTCAA-
 A C G T A G T C A C G T A C T G A T G C A G T C C G T A C T G A C T A G
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CTGCCAAR-
-TGTCANYT
 A G T C A C G T A C T G A T G C A G T C C G T A C T G A C T A G A C G T
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAAR
CCTGTCAA-
 A C G T A G T C A C G T A C T G A T G C A G T C C G T A C T G A C T A G
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T