Index of /Public_SPACE/mao/Public_html/bin/
../
old/ 28-Jul-2025 17:48 -
GenomeOntology.pl 05-Jul-2016 18:15 8893
HomerConfig.pm 29-Dec-2023 19:33 16242
HomerSVGLogo.pm 24-Apr-2023 14:54 3712
HomerSeqBias.pm 24-Aug-2023 19:28 16293
SIMA.pl 02-May-2018 08:00 28373
Statistics.pm 21-Nov-2022 17:29 23765
addData.pl 27-Mar-2014 23:08 892
addDataHeader.pl 27-Mar-2014 23:08 1170
addGeneAnnotation.pl 05-Jul-2016 18:15 1856
addInternalData.pl 27-Mar-2014 23:14 1234
addOligos.pl 27-Mar-2014 23:15 989
adjustPeakFile.pl 30-Mar-2023 00:46 6871
adjustPvalueMatrix.pl 27-Apr-2024 20:30 4225
adjustRedunGroupFile.pl 27-Mar-2014 23:15 1646
analyzeChIP-Seq.pl 13-Aug-2022 01:29 16547
analyzeClusters.pl 28-May-2024 20:21 24438
analyzeHiC 17-Jul-2024 12:35 3036456
analyzeRNA.pl 05-Jul-2016 18:15 33083
analyzeRepeats.pl 10-Jan-2019 23:02 45561
annotateInteractions.pl 20-Jun-2017 17:38 55266
annotatePeaks.pl 01-Sep-2023 12:26 130120
annotateRelativePosition.pl 14-Mar-2019 19:45 6776
annotateTranscripts.pl 05-Jul-2016 18:15 16367
assignGeneWeights.pl 27-Mar-2014 23:19 2553
assignGenomeAnnotation 17-Jul-2024 12:35 2914904
assignTSStoGene.pl 20-Aug-2020 15:27 8389
batchAnnotatePeaksHistogram.pl 27-Mar-2014 23:20 1214
batchFindMotifs.pl 25-May-2016 07:01 1283
batchFindMotifsGenome.pl 13-Aug-2022 01:29 2833
batchMakeHiCMatrix.pl 31-Jan-2024 16:32 4608
batchMakeMultiWigHub.pl 20-Dec-2016 16:15 1804
batchMakeTagDirectory.pl 23-Aug-2023 15:02 2469
batchParallel.pl 02-May-2024 17:36 2534
bed2DtoUCSCbed.pl 16-Mar-2023 21:27 6806
bed2pos.pl 30-Mar-2023 00:45 3506
bed2tag.pl 27-Mar-2014 23:22 378
blat2gtf.pl 27-May-2016 07:29 1474
bridgeResult2Cytoscape.pl 27-May-2016 07:29 1428
calcScore.pl 15-Dec-2023 16:22 6250
changeNewLine.pl 27-Mar-2014 23:23 563
checkPeakFile.pl 27-Mar-2014 23:24 1773
checkTagBias.pl 05-Jul-2016 18:15 8629
chopUpBackground.pl 27-Mar-2014 23:26 1025
chopUpPeakFile.pl 27-Mar-2014 23:26 1036
chopify.pl 27-Mar-2014 23:25 854
cleanUpPeakFile.pl 27-Mar-2014 23:27 807
cleanUpSequences.pl 27-Mar-2014 23:27 1396
cluster2bed.pl 05-May-2016 02:24 2865
cluster2bedgraph.pl 27-Mar-2014 23:27 1352
combineGO.pl 15-Dec-2023 18:07 3380
combineHubs.pl 27-May-2016 07:30 929
compareMotifs.pl 24-Apr-2023 18:24 43879
condenseBedGraph.pl 27-Mar-2014 23:29 1315
cons2fasta.pl 27-Mar-2014 23:30 1573
conservationAverage.pl 27-Mar-2014 23:30 645
conservationPerLocus.pl 27-Mar-2014 23:31 315
convertCoordinates.pl 19-Jan-2017 18:13 5962
convertIDs.pl 05-Jul-2016 18:15 2232
convertOrganismID.pl 22-Aug-2022 23:29 2663
createHomer2EnrichmentTable.pl 01-May-2024 13:55 45553
createIGVhtml.pl 22-Jan-2021 13:52 19807
createScoredFasta.pl 01-Aug-2022 19:25 4563
duplicateCol.pl 27-Mar-2014 23:32 416
eland2tags.pl 27-Mar-2014 23:32 9540
fasta2tab.pl 27-Mar-2014 23:33 1603
fastq2fasta.pl 27-Mar-2014 23:33 444
filterListBy.pl 30-Apr-2024 12:14 1301
filterTADsAndCPs.pl 22-Sep-2017 15:19 14302
filterTADsAndLoops.pl 23-Aug-2018 08:31 15465
filterTagDirectory.pl 21-Jun-2019 20:19 4119
findGO.pl 21-Apr-2017 23:53 6995
findGOtxt.pl 05-Jul-2016 18:15 2756
findHiCCompartments.pl 20-Jun-2017 00:22 5920
findHiCDomains.pl 02-May-2018 07:59 17315
findHiCInteractionsByChr.pl 02-May-2018 07:52 5454
findKnownMotifs.pl 28-Jul-2020 20:39 14966
findMotifs.pl 01-May-2024 00:53 44942
findMotifsGenome.pl 17-Jul-2024 12:30 52640
findPeaks 17-Jul-2024 12:35 2944144
findRedundantBLAT.pl 27-Mar-2014 23:37 915
findTADsAndLoops.pl 13-Mar-2023 17:24 20609
findTADsAndLoopsFromRelMatrix 17-Jul-2024 12:35 3009424
findTopMotifs.pl 27-Mar-2014 23:38 2947
findcsRNATSR.pl 19-Oct-2022 13:52 38036
findcsRNATSS.pl 19-Oct-2022 13:53 38202
flipPC1toMatch.pl 04-May-2018 23:58 1680
freq2group.pl 27-Mar-2014 23:38 1032
genericConvertIDs.pl 27-Mar-2014 23:38 1923
genomeOntology 17-Jul-2024 12:35 2929816
getChrLengths.pl 27-Mar-2014 23:40 700
getConservedRegions.pl 10-Jan-2022 15:35 9788
getDiffExpression.pl 29-Nov-2023 17:20 36094
getDifferentialBedGraph.pl 27-Mar-2014 23:40 2153
getDifferentialPeaks 17-Jul-2024 12:35 2916456
getDifferentialPeaksReplicates.pl 13-Aug-2022 01:31 7489
getDistalPeaks.pl 03-Feb-2024 22:08 3856
getFocalPeaks.pl 07-Dec-2015 18:19 1036
getGWASoverlap.pl 22-Nov-2021 21:03 28636
getGenesInCategory.pl 27-Mar-2014 23:44 517
getGenomeTilingPeaks 17-Jul-2024 12:35 2907584
getHiCcorrDiff.pl 02-May-2018 07:39 5499
getHomerQCstats.pl 13-Aug-2022 01:29 8714
getLikelyAdapters.pl 09-Feb-2021 16:25 2231
getMappableRegions 17-Jul-2024 12:35 144024
getMappingStats.pl 12-Sep-2018 18:52 5238
getPartOfPromoter.pl 27-Mar-2014 23:46 391
getPeakTags 17-Jul-2024 12:35 2926880
getPos.pl 27-Mar-2014 23:46 419
getRandomReads.pl 27-Mar-2014 23:46 1936
getSiteConservation.pl 27-Mar-2014 23:47 1283
getTSSfromReads.pl 01-Mar-2024 12:27 19497
getTopPeaks.pl 12-Aug-2022 12:30 751
gff2pos.pl 27-Mar-2014 23:47 512
go2cytoscape.pl 27-Mar-2014 23:47 2324
groupSequences.pl 27-Mar-2014 23:48 1193
homer 17-Jul-2024 12:35 895392
homer2 17-Jul-2024 12:35 1070552
homer2jaspar.pl 10-Sep-2021 14:38 1716
homerTools 17-Jul-2024 12:35 3048832
joinFiles.pl 27-Mar-2014 23:48 449
loadGenome.pl 25-Jul-2016 23:01 9863
loadPromoters.pl 10-Jan-2022 15:36 11014
makeBigBedMotifTrack.pl 27-Mar-2014 23:49 2137
makeBigWig.pl 06-Sep-2018 20:53 9220
makeBinaryFile.pl 27-Mar-2014 23:50 622
makeHiCWashUfile.pl 27-Mar-2014 23:50 5721
makeMetaGeneProfile.pl 05-Jul-2016 18:15 5893
makeMultiWigHub.pl 08-Sep-2022 16:27 15905
makeTagDirectory 17-Jul-2024 12:35 2953880
makeUCSCfile 17-Jul-2024 12:35 2934008
map-fastq.pl 07-Jun-2022 20:36 16933
merge2Dbed.pl 09-Feb-2023 18:50 12815
mergeData.pl 27-Mar-2014 23:51 4784
mergePeaks 17-Jul-2024 12:35 2921720
motif2Jaspar.pl 27-Mar-2014 23:52 503
motif2Logo.pl 27-Mar-2014 23:52 1885
pacifierHomer2.pl 27-Apr-2024 20:23 78778
parseGTF.pl 21-Nov-2023 13:45 23112
pos2bed.pl 02-Feb-2020 12:15 2917
powerSpec.pl 27-Apr-2024 20:55 5685
prepForR.pl 05-Jul-2016 18:15 0
preparseGenome.pl 05-Jul-2016 18:15 10110
profile2seq.pl 27-Mar-2014 23:54 1296
qseq2fastq.pl 27-Mar-2014 23:54 1590
randRemoveBackground.pl 27-Mar-2014 23:55 2271
randomizeGroupFile.pl 27-Mar-2014 23:54 646
randomizeMotif.pl 31-Aug-2022 22:15 2287
randomizeMotifs.pl 27-Mar-2014 23:54 1548
removeAccVersion.pl 28-Jan-2016 00:01 989
removeBadSeq.pl 27-Mar-2014 23:55 453
removeOutOfBoundsReads.pl 05-Jul-2016 18:15 4981
removePoorSeq.pl 27-Mar-2014 23:56 2009
removeRedundantPeaks.pl 10-Jan-2022 15:35 5764
renamePeaks.pl 27-Mar-2014 23:56 593
resizePosFile.pl 03-Apr-2023 18:14 2102
revoppMotif.pl 27-Mar-2014 23:57 691
rotateHiCmatrix.pl 09-May-2018 19:59 3875
runHiCpca.pl 23-Aug-2018 09:08 20343
sam2spliceJunc.pl 27-May-2016 07:31 1497
scanMotifGenomeWide.pl 23-Sep-2021 13:50 7450
scrambleFasta.pl 27-Mar-2014 23:58 1496
script-findAllTSS.pl 22-Sep-2021 22:52 2484
selectRepeatBg.pl 30-Nov-2016 22:19 12770
seq2profile.pl 27-Mar-2014 23:58 2596
subtractBedGraphs.pl 24-May-2018 17:26 3570
subtractBedGraphsDirectory.pl 17-May-2018 22:31 2869
tab2fasta.pl 23-Nov-2015 22:00 383
tag2bed.pl 28-Mar-2014 00:00 596
tag2pos.pl 28-Mar-2014 00:00 1737
tagDir2HiCsummary.pl 19-Aug-2021 11:34 5800
tagDir2bed.pl 28-Mar-2014 00:00 1891
tagDir2hicFile.pl 19-Aug-2021 11:34 5800
zipHomerResults.pl 28-Mar-2014 00:00 429