Information for 9-GCCAAARHAAAC (Motif 9)

C A T G G T A C A G T C C G T A C G T A C T G A T C G A G A T C G T C A G T C A C T G A A G T C
Reverse Opposite:
T C A G A G C T A C G T A C G T C T A G A G C T A G C T A C G T A C G T A C T G A C T G G T A C
p-value:1e-558
log p-value:-1.286e+03
Information Content per bp:1.741
Number of Target Sequences with motif2457.0
Percentage of Target Sequences with motif3.81%
Number of Background Sequences with motif701.7
Percentage of Background Sequences with motif1.13%
Average Position of motif in Targets98.4 +/- 51.7bp
Average Position of motif in Background97.9 +/- 58.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAARHAAAC---
TGCCAAAATAAACANN
 A C G T C A T G G T A C A G T C C G T A C G T A C T G A T C G A G A T C G T C A G T C A C T G A A G T C A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GCCAAARHAAAC
CGTGCCAAG------
 A C G T A C G T A C G T C A T G G T A C A G T C C G T A C G T A C T G A T C G A G A T C G T C A G T C A C T G A A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GCCAAARHAAAC
GGTGCCAAGT-----
 A C G T A C G T A C G T C A T G G T A C A G T C C G T A C G T A C T G A T C G A G A T C G T C A G T C A C T G A A G T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GCCAAARHAAAC
NNTGCCAAGNN----
 A C G T A C G T A C G T C A T G G T A C A G T C C G T A C G T A C T G A T C G A G A T C G T C A G T C A C T G A A G T C
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T A C G T A C G T A C G T

FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCCAAARHAAAC-
-GCTAARTAAACA
 C A T G G T A C A G T C C G T A C G T A C T G A T C G A G A T C G T C A G T C A C T G A A G T C A C G T
A C G T A T C G G A T C G C A T T C G A G C T A T C G A G C A T G T C A C G T A G T C A G A T C G C T A

PB0186.1_Tcf3_2/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCCAAARHAAAC-
AGCCGAAAAAAAAAT
 A C G T A C G T C A T G G T A C A G T C C G T A C G T A C T G A T C G A G A T C G T C A G T C A C T G A A G T C A C G T
C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCCAAARHAAAC--
AACACCAAAACAAAGGA
 A C G T A C G T A C G T C A T G G T A C A G T C C G T A C G T A C T G A T C G A G A T C G T C A G T C A C T G A A G T C A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

FOXE1/MA1487.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCCAAARHAAAC---
CCTTAAATAAACAAT
 C A T G G T A C A G T C C G T A C G T A C T G A T C G A G A T C G T C A G T C A C T G A A G T C A C G T A C G T A C G T
A T G C T G A C A G C T C G A T T C G A C G T A C T G A A G C T G T C A G T C A C G T A A G T C C T G A C G T A G A C T

FOXD2/MA0847.2/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCCAAARHAAAC--
-GTTAAGTAAACAA
 C A T G G T A C A G T C C G T A C G T A C T G A T C G A G A T C G T C A G T C A C T G A A G T C A C G T A C G T
A C G T T A C G G A C T G C A T T C G A G C T A T C A G G A C T G T C A T G C A C G T A A G T C C G T A G C T A

PB0116.1_Elf3_2/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCCAAARHAAAC---
GTTCAAAAAAAAAATTC
 A C G T A C G T C A T G G T A C A G T C C G T A C G T A C T G A T C G A G A T C G T C A G T C A C T G A A G T C A C G T A C G T A C G T
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C