Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 64557)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 62084)	% of Background Sequences with Motif
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-6870	-1.582e+04	0.0000	29425.0	45.58%	9821.7	15.82%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-6723	-1.548e+04	0.0000	32552.0	50.42%	12076.1	19.45%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-6597	-1.519e+04	0.0000	29533.0	45.75%	10167.5	16.38%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-5847	-1.346e+04	0.0000	22881.0	35.44%	6803.8	10.96%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-5037	-1.160e+04	0.0000	22607.0	35.02%	7405.0	11.93%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-4858	-1.119e+04	0.0000	9296.0	14.40%	1196.5	1.93%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-4815	-1.109e+04	0.0000	9637.0	14.93%	1320.6	2.13%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-4381	-1.009e+04	0.0000	13081.0	20.26%	2879.0	4.64%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-4303	-9.909e+03	0.0000	7538.0	11.68%	845.1	1.36%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-4027	-9.275e+03	0.0000	6783.0	10.51%	713.3	1.15%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-4001	-9.214e+03	0.0000	9876.0	15.30%	1746.2	2.81%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-3932	-9.054e+03	0.0000	29974.0	46.43%	13896.5	22.38%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-3054	-7.034e+03	0.0000	22203.0	34.39%	9590.4	15.45%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2959	-6.814e+03	0.0000	20751.0	32.14%	8730.7	14.06%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-2836	-6.532e+03	0.0000	21857.0	33.86%	9687.2	15.60%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2631	-6.060e+03	0.0000	17658.0	27.35%	7133.1	11.49%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2359	-5.434e+03	0.0000	11851.0	18.36%	3905.2	6.29%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-2354	-5.422e+03	0.0000	18308.0	28.36%	7987.4	12.86%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-2093	-4.820e+03	0.0000	13570.0	21.02%	5259.2	8.47%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1675	-3.857e+03	0.0000	34068.0	52.77%	22237.4	35.81%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1351	-3.113e+03	0.0000	23327.0	36.13%	13927.1	22.43%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-910	-2.096e+03	0.0000	2134.0	3.31%	338.1	0.54%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-883	-2.033e+03	0.0000	15871.0	24.58%	9298.3	14.98%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-722	-1.665e+03	0.0000	15512.0	24.03%	9511.4	15.32%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-654	-1.508e+03	0.0000	4254.0	6.59%	1573.3	2.53%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-420	-9.674e+02	0.0000	20548.0	31.83%	15024.2	24.20%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-374	-8.621e+02	0.0000	3612.0	5.59%	1620.5	2.61%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-341	-7.869e+02	0.0000	9183.0	14.22%	5822.8	9.38%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-299	-6.903e+02	0.0000	28793.0	44.60%	23264.3	37.47%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-290	-6.681e+02	0.0000	12368.0	19.16%	8665.5	13.96%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-282	-6.500e+02	0.0000	4219.0	6.54%	2240.1	3.61%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-272	-6.271e+02	0.0000	25826.0	40.00%	20713.8	33.36%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-272	-6.266e+02	0.0000	26652.0	41.28%	21478.4	34.59%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-270	-6.226e+02	0.0000	10674.0	16.53%	7347.4	11.83%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-235	-5.423e+02	0.0000	12602.0	19.52%	9162.0	14.76%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-199	-4.585e+02	0.0000	7773.0	12.04%	5302.2	8.54%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-183	-4.236e+02	0.0000	9192.0	14.24%	6563.7	10.57%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-178	-4.102e+02	0.0000	6043.0	9.36%	3995.5	6.43%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-169	-3.907e+02	0.0000	4288.0	6.64%	2644.6	4.26%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-155	-3.587e+02	0.0000	1169.0	1.81%	462.1	0.74%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-154	-3.569e+02	0.0000	6943.0	10.75%	4845.5	7.80%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-151	-3.493e+02	0.0000	9775.0	15.14%	7257.1	11.69%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-140	-3.232e+02	0.0000	10810.0	16.74%	8231.5	13.26%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-134	-3.102e+02	0.0000	5855.0	9.07%	4055.1	6.53%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-134	-3.099e+02	0.0000	5747.0	8.90%	3967.4	6.39%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-133	-3.083e+02	0.0000	12826.0	19.87%	10052.3	16.19%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-133	-3.070e+02	0.0000	6046.0	9.37%	4220.8	6.80%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-131	-3.019e+02	0.0000	19216.0	29.77%	15837.9	25.51%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-130	-3.008e+02	0.0000	1881.0	2.91%	980.1	1.58%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-130	-3.007e+02	0.0000	8910.0	13.80%	6656.2	10.72%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-128	-2.962e+02	0.0000	26105.0	40.44%	22250.9	35.84%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-127	-2.940e+02	0.0000	2506.0	3.88%	1440.9	2.32%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-125	-2.897e+02	0.0000	3486.0	5.40%	2193.9	3.53%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-124	-2.856e+02	0.0000	6395.0	9.91%	4563.5	7.35%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-122	-2.824e+02	0.0000	6171.0	9.56%	4385.0	7.06%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-122	-2.818e+02	0.0000	6946.0	10.76%	5036.1	8.11%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-122	-2.811e+02	0.0000	3682.0	5.70%	2362.5	3.80%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-121	-2.789e+02	0.0000	4521.0	7.00%	3036.9	4.89%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-119	-2.762e+02	0.0000	14501.0	22.46%	11667.4	18.79%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-116	-2.679e+02	0.0000	5063.0	7.84%	3502.5	5.64%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-112	-2.581e+02	0.0000	4772.0	7.39%	3286.6	5.29%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-110	-2.548e+02	0.0000	9282.0	14.38%	7123.2	11.47%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-106	-2.460e+02	0.0000	7974.0	12.35%	6018.6	9.69%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-105	-2.429e+02	0.0000	10344.0	16.02%	8095.2	13.04%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-105	-2.427e+02	0.0000	5140.0	7.96%	3626.6	5.84%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-105	-2.426e+02	0.0000	5325.0	8.25%	3780.9	6.09%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-103	-2.379e+02	0.0000	14325.0	22.19%	11667.7	18.79%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-97	-2.255e+02	0.0000	5150.0	7.98%	3678.4	5.92%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-97	-2.240e+02	0.0000	15750.0	24.40%	13021.9	20.97%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-96	-2.219e+02	0.0000	6404.0	9.92%	4746.5	7.64%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-95	-2.188e+02	0.0000	4304.0	6.67%	2994.3	4.82%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-92	-2.119e+02	0.0000	1458.0	2.26%	784.6	1.26%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-91	-2.112e+02	0.0000	5125.0	7.94%	3695.0	5.95%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-85	-1.959e+02	0.0000	1873.0	2.90%	1110.5	1.79%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-83	-1.912e+02	0.0000	7877.0	12.20%	6119.4	9.86%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-80	-1.855e+02	0.0000	2723.0	4.22%	1787.1	2.88%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-80	-1.847e+02	0.0000	7403.0	11.47%	5729.6	9.23%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-79	-1.838e+02	0.0000	9393.0	14.55%	7482.5	12.05%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-77	-1.780e+02	0.0000	2415.0	3.74%	1558.9	2.51%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-75	-1.727e+02	0.0000	5481.0	8.49%	4109.6	6.62%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-71	-1.654e+02	0.0000	6554.0	10.15%	5059.1	8.15%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-70	-1.623e+02	0.0000	2752.0	4.26%	1859.6	2.99%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-68	-1.584e+02	0.0000	15013.0	23.25%	12678.6	20.42%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-67	-1.560e+02	0.0000	27087.0	41.96%	23965.2	38.60%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-66	-1.527e+02	0.0000	6380.0	9.88%	4954.9	7.98%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-66	-1.522e+02	0.0000	15474.0	23.97%	13136.6	21.16%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-64	-1.490e+02	0.0000	1862.0	2.88%	1179.3	1.90%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-61	-1.406e+02	0.0000	4750.0	7.36%	3587.7	5.78%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-61	-1.405e+02	0.0000	2713.0	4.20%	1877.4	3.02%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-59	-1.364e+02	0.0000	25037.0	38.78%	22162.0	35.69%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-58	-1.353e+02	0.0000	3093.0	4.79%	2203.0	3.55%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-57	-1.327e+02	0.0000	14008.0	21.70%	11902.9	19.17%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-53	-1.230e+02	0.0000	4392.0	6.80%	3339.9	5.38%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-52	-1.203e+02	0.0000	6482.0	10.04%	5172.6	8.33%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-50	-1.165e+02	0.0000	2675.0	4.14%	1906.7	3.07%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-49	-1.150e+02	0.0000	586.0	0.91%	284.9	0.46%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-49	-1.134e+02	0.0000	6835.0	10.59%	5515.0	8.88%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-47	-1.103e+02	0.0000	2067.0	3.20%	1422.3	2.29%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-46	-1.069e+02	0.0000	513.0	0.79%	243.6	0.39%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-45	-1.054e+02	0.0000	784.0	1.21%	433.6	0.70%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-43	-1.007e+02	0.0000	4925.0	7.63%	3885.8	6.26%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-42	-9.742e+01	0.0000	459.0	0.71%	216.3	0.35%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-41	-9.605e+01	0.0000	3336.0	5.17%	2525.3	4.07%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-39	-9.196e+01	0.0000	1010.0	1.56%	621.3	1.00%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-39	-9.149e+01	0.0000	523.0	0.81%	265.5	0.43%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-38	-8.928e+01	0.0000	3226.0	5.00%	2454.5	3.95%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-38	-8.839e+01	0.0000	1502.0	2.33%	1015.4	1.64%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-36	-8.439e+01	0.0000	4340.0	6.72%	3440.5	5.54%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-36	-8.361e+01	0.0000	4326.0	6.70%	3431.9	5.53%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-35	-8.193e+01	0.0000	6473.0	10.03%	5346.3	8.61%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-35	-8.129e+01	0.0000	5146.0	7.97%	4165.8	6.71%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-34	-7.932e+01	0.0000	2768.0	4.29%	2096.8	3.38%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-33	-7.763e+01	0.0000	2362.0	3.66%	1756.7	2.83%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-32	-7.429e+01	0.0000	2772.0	4.29%	2117.1	3.41%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-32	-7.376e+01	0.0000	1703.0	2.64%	1215.4	1.96%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-31	-7.259e+01	0.0000	3470.0	5.37%	2728.6	4.39%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-30	-7.043e+01	0.0000	17709.0	27.43%	15789.2	25.43%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-29	-6.893e+01	0.0000	5009.0	7.76%	4104.9	6.61%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-29	-6.824e+01	0.0000	3304.0	5.12%	2601.6	4.19%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-28	-6.538e+01	0.0000	5583.0	8.65%	4637.9	7.47%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-28	-6.521e+01	0.0000	8418.0	13.04%	7210.7	11.61%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-28	-6.466e+01	0.0000	5763.0	8.93%	4803.8	7.74%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-28	-6.448e+01	0.0000	659.0	1.02%	399.3	0.64%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-27	-6.382e+01	0.0000	3841.0	5.95%	3093.0	4.98%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-26	-6.177e+01	0.0000	2170.0	3.36%	1645.0	2.65%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-26	-6.171e+01	0.0000	395.0	0.61%	209.6	0.34%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-26	-6.093e+01	0.0000	5337.0	8.27%	4441.9	7.15%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-25	-5.983e+01	0.0000	4641.0	7.19%	3823.4	6.16%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-25	-5.942e+01	0.0000	1573.0	2.44%	1147.1	1.85%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-24	-5.708e+01	0.0000	19539.0	30.27%	17641.9	28.41%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-24	-5.627e+01	0.0000	9787.0	15.16%	8534.2	13.74%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-24	-5.627e+01	0.0000	1639.0	2.54%	1212.9	1.95%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-23	-5.435e+01	0.0000	5395.0	8.36%	4532.8	7.30%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-23	-5.423e+01	0.0000	6102.0	9.45%	5173.6	8.33%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-21	-4.929e+01	0.0000	1199.0	1.86%	864.9	1.39%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-20	-4.645e+01	0.0000	11154.0	17.28%	9887.0	15.92%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-19	-4.507e+01	0.0000	724.0	1.12%	487.0	0.78%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-18	-4.374e+01	0.0000	8835.0	13.69%	7759.5	12.50%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-18	-4.337e+01	0.0000	8560.0	13.26%	7508.0	12.09%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-18	-4.325e+01	0.0000	840.0	1.30%	584.7	0.94%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-18	-4.296e+01	0.0000	1357.0	2.10%	1016.8	1.64%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-18	-4.250e+01	0.0000	5657.0	8.76%	4848.5	7.81%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-17	-4.130e+01	0.0000	1109.0	1.72%	812.8	1.31%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-17	-4.089e+01	0.0000	2684.0	4.16%	2179.3	3.51%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-17	-4.040e+01	0.0000	2532.0	3.92%	2047.2	3.30%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-17	-3.995e+01	0.0000	2655.0	4.11%	2158.1	3.48%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-16	-3.871e+01	0.0000	5504.0	8.53%	4736.3	7.63%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-16	-3.828e+01	0.0000	4508.0	6.98%	3832.8	6.17%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-16	-3.727e+01	0.0000	3377.0	5.23%	2817.1	4.54%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-16	-3.719e+01	0.0000	8680.0	13.45%	7675.8	12.36%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-15	-3.622e+01	0.0000	18772.0	29.08%	17159.9	27.64%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-15	-3.493e+01	0.0000	3746.0	5.80%	3164.4	5.10%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-14	-3.329e+01	0.0000	10766.0	16.68%	9658.1	15.55%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-14	-3.261e+01	0.0000	67.0	0.10%	21.7	0.03%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-13	-3.175e+01	0.0000	715.0	1.11%	511.0	0.82%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-13	-3.016e+01	0.0000	3992.0	6.18%	3420.4	5.51%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-12	-2.886e+01	0.0000	3653.0	5.66%	3121.9	5.03%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-12	-2.860e+01	0.0000	5692.0	8.82%	4991.3	8.04%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-11	-2.586e+01	0.0000	709.0	1.10%	523.4	0.84%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-11	-2.586e+01	0.0000	709.0	1.10%	523.4	0.84%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-11	-2.548e+01	0.0000	2644.0	4.10%	2230.1	3.59%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-10	-2.516e+01	0.0000	1070.0	1.66%	834.3	1.34%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-10	-2.496e+01	0.0000	521.0	0.81%	369.3	0.59%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-10	-2.462e+01	0.0000	5681.0	8.80%	5018.1	8.08%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-10	-2.451e+01	0.0000	23760.0	36.80%	22079.5	35.56%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-10	-2.341e+01	0.0000	701.0	1.09%	524.4	0.84%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-9	-2.277e+01	0.0000	10414.0	16.13%	9456.4	15.23%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-9	-2.159e+01	0.0000	8260.0	12.79%	7452.9	12.00%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-9	-2.143e+01	0.0000	11213.0	17.37%	10226.5	16.47%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-9	-2.110e+01	0.0000	3706.0	5.74%	3230.7	5.20%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-9	-2.088e+01	0.0000	592.0	0.92%	440.4	0.71%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-9	-2.081e+01	0.0000	8256.0	12.79%	7458.8	12.01%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-8	-2.071e+01	0.0000	1709.0	2.65%	1420.0	2.29%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-8	-2.009e+01	0.0000	8293.0	12.85%	7502.8	12.08%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-8	-1.989e+01	0.0000	97.0	0.15%	48.4	0.08%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-8	-1.974e+01	0.0000	1309.0	2.03%	1068.1	1.72%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-8	-1.889e+01	0.0000	2166.0	3.36%	1842.1	2.97%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-8	-1.854e+01	0.0000	1563.0	2.42%	1301.9	2.10%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-7	-1.724e+01	0.0000	2307.0	3.57%	1982.3	3.19%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-7	-1.711e+01	0.0000	283.0	0.44%	194.9	0.31%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-7	-1.698e+01	0.0000	6326.0	9.80%	5702.0	9.18%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-6	-1.582e+01	0.0000	1110.0	1.72%	913.0	1.47%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-6	-1.530e+01	0.0000	9232.0	14.30%	8453.6	13.61%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-6	-1.496e+01	0.0000	1789.0	2.77%	1528.7	2.46%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-6	-1.438e+01	0.0000	1422.0	2.20%	1200.4	1.93%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-6	-1.432e+01	0.0000	3169.0	4.91%	2798.8	4.51%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-6	-1.419e+01	0.0000	8282.0	12.83%	7576.9	12.20%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-5	-1.361e+01	0.0000	130.0	0.20%	80.1	0.13%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-5	-1.346e+01	0.0000	2100.0	3.25%	1823.7	2.94%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-5	-1.309e+01	0.0000	308.0	0.48%	225.5	0.36%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-5	-1.214e+01	0.0000	5065.0	7.85%	4587.6	7.39%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-5	-1.199e+01	0.0000	2394.0	3.71%	2106.3	3.39%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-5	-1.177e+01	0.0000	1251.0	1.94%	1063.8	1.71%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-5	-1.161e+01	0.0000	1882.0	2.92%	1639.5	2.64%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-5	-1.154e+01	0.0000	3567.0	5.53%	3197.4	5.15%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-4	-1.135e+01	0.0000	3572.0	5.53%	3204.2	5.16%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-4	-1.100e+01	0.0000	8000.0	12.39%	7364.6	11.86%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-4	-1.070e+01	0.0001	945.0	1.46%	795.0	1.28%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-4	-1.064e+01	0.0001	3611.0	5.59%	3249.5	5.23%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-4	-1.062e+01	0.0001	4899.0	7.59%	4453.4	7.17%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-4	-1.037e+01	0.0001	4578.0	7.09%	4156.4	6.69%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-4	-9.932e+00	0.0001	388.0	0.60%	304.3	0.49%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-4	-9.918e+00	0.0001	3720.0	5.76%	3360.9	5.41%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-4	-9.719e+00	0.0001	4459.0	6.91%	4054.6	6.53%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-4	-9.587e+00	0.0001	262.0	0.41%	197.3	0.32%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-4	-9.536e+00	0.0002	1209.0	1.87%	1041.7	1.68%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-3	-8.983e+00	0.0003	2003.0	3.10%	1775.6	2.86%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-3	-8.932e+00	0.0003	2670.0	4.14%	2394.3	3.86%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-3	-8.729e+00	0.0003	1750.0	2.71%	1544.9	2.49%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-3	-8.422e+00	0.0005	2572.0	3.98%	2309.0	3.72%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-3	-8.332e+00	0.0005	121.0	0.19%	83.8	0.13%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-3	-8.084e+00	0.0006	40.0	0.06%	21.7	0.03%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-3	-7.961e+00	0.0007	25.0	0.04%	11.5	0.02%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-3	-7.958e+00	0.0007	1526.0	2.36%	1345.8	2.17%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-3	-7.691e+00	0.0009	190.0	0.29%	142.5	0.23%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-3	-7.577e+00	0.0010	373.0	0.58%	301.7	0.49%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-3	-7.498e+00	0.0011	11752.0	18.20%	10998.0	17.71%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-3	-7.485e+00	0.0011	587.0	0.91%	492.8	0.79%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-3	-7.420e+00	0.0012	6512.0	10.09%	6027.2	9.71%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-3	-7.274e+00	0.0014	77.0	0.12%	50.1	0.08%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-3	-7.201e+00	0.0015	3165.0	4.90%	2879.3	4.64%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-3	-7.199e+00	0.0015	4685.0	7.26%	4307.2	6.94%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-3	-7.132e+00	0.0016	549.0	0.85%	460.5	0.74%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-6.871e+00	0.0020	412.0	0.64%	339.6	0.55%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-2	-6.711e+00	0.0024	35.0	0.05%	19.9	0.03%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-2	-6.492e+00	0.0030	56.0	0.09%	35.2	0.06%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-2	-6.477e+00	0.0030	290.0	0.45%	233.3	0.38%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-2	-6.413e+00	0.0032	5086.0	7.88%	4700.7	7.57%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-6.344e+00	0.0034	1240.0	1.92%	1097.2	1.77%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-2	-6.294e+00	0.0035	11992.0	18.58%	11259.5	18.13%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-2	-6.099e+00	0.0043	95.0	0.15%	67.7	0.11%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-2	-6.076e+00	0.0044	3189.0	4.94%	2919.8	4.70%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-5.742e+00	0.0061	2261.0	3.50%	2054.7	3.31%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-2	-5.722e+00	0.0062	2710.0	4.20%	2475.5	3.99%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-2	-5.530e+00	0.0074	2776.0	4.30%	2540.5	4.09%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-2	-5.477e+00	0.0078	3225.0	5.00%	2963.5	4.77%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-2	-5.442e+00	0.0080	7801.0	12.08%	7295.5	11.75%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-2	-5.357e+00	0.0087	634.0	0.98%	549.1	0.88%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-2	-5.094e+00	0.0113	334.0	0.52%	279.0	0.45%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-2	-4.990e+00	0.0125	2104.0	3.26%	1918.7	3.09%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-2	-4.867e+00	0.0140	440.0	0.68%	376.6	0.61%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-4.758e+00	0.0156	470.0	0.73%	404.7	0.65%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-1	-4.206e+00	0.0270	10442.0	16.17%	9848.0	15.86%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-4.072e+00	0.0307	749.0	1.16%	666.2	1.07%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.990e+00	0.0332	1970.0	3.05%	1808.8	2.91%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-3.975e+00	0.0336	643.0	1.00%	569.9	0.92%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-1	-3.894e+00	0.0363	15994.0	24.77%	15167.5	24.43%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-3.860e+00	0.0374	4741.0	7.34%	4431.9	7.14%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-3.811e+00	0.0391	611.0	0.95%	541.5	0.87%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-3.769e+00	0.0406	1698.0	2.63%	1556.7	2.51%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.726e+00	0.0422	2185.0	3.38%	2015.5	3.25%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-3.685e+00	0.0438	4853.0	7.52%	4542.5	7.32%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-3.639e+00	0.0457	2354.0	3.65%	2176.7	3.51%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.447e+00	0.0549	701.0	1.09%	628.7	1.01%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.447e+00	0.0549	701.0	1.09%	628.7	1.01%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-1	-3.442e+00	0.0550	5070.0	7.85%	4755.7	7.66%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-1	-3.341e+00	0.0606	4886.0	7.57%	4583.4	7.38%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-3.162e+00	0.0722	3506.0	5.43%	3277.4	5.28%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-3.146e+00	0.0731	1088.0	1.69%	993.5	1.60%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-1	-3.145e+00	0.0731	537.0	0.83%	480.0	0.77%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-2.831e+00	0.0994	3005.0	4.65%	2810.0	4.53%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-2.527e+00	0.1342	1306.0	2.02%	1208.6	1.95%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-2.482e+00	0.1398	1556.0	2.41%	1445.5	2.33%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.145e+00	0.1951	4938.0	7.65%	4672.4	7.52%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-2.096e+00	0.2042	2010.0	3.11%	1884.9	3.04%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-2.082e+00	0.2063	824.0	1.28%	761.2	1.23%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.859e+00	0.2567	1042.0	1.61%	971.0	1.56%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.768e+00	0.2803	1116.0	1.73%	1043.9	1.68%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.665e+00	0.3094	1647.0	2.55%	1550.9	2.50%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.649e+00	0.3132	222.0	0.34%	201.1	0.32%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.629e+00	0.3184	473.0	0.73%	438.0	0.71%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.615e+00	0.3219	886.0	1.37%	828.4	1.33%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.608e+00	0.3227	1700.0	2.63%	1602.4	2.58%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.531e+00	0.3473	445.0	0.69%	412.9	0.66%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.426e+00	0.3845	30.0	0.05%	25.2	0.04%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.383e+00	0.3998	1646.0	2.55%	1557.5	2.51%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.254e+00	0.4533	4129.0	6.40%	3937.7	6.34%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.169e+00	0.4916	6817.0	10.56%	6519.4	10.50%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.147e+00	0.5008	231.0	0.36%	215.3	0.35%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.145e+00	0.5008	388.0	0.60%	364.4	0.59%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.139e+00	0.5013	451.0	0.70%	424.3	0.68%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.041e+00	0.5510	490.0	0.76%	463.2	0.75%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.040e+00	0.5510	426.0	0.66%	402.4	0.65%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.039e+00	0.5510	342.0	0.53%	322.3	0.52%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-9.866e-01	0.5756	559.0	0.87%	530.3	0.85%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-8.573e-01	0.6528	847.0	1.31%	809.7	1.30%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-8.080e-01	0.6834	158.0	0.24%	150.9	0.24%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-7.326e-01	0.7343	1514.0	2.35%	1454.1	2.34%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-6.815e-01	0.7702	22111.0	34.25%	21268.0	34.25%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-6.555e-01	0.7878	2298.0	3.56%	2212.3	3.56%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.251e-01	0.8093	1677.0	2.60%	1616.3	2.60%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-5.927e-01	0.8331	341.0	0.53%	330.4	0.53%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-5.294e-01	0.8845	8186.0	12.68%	7891.4	12.71%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-4.915e-01	0.9155	1408.0	2.18%	1364.7	2.20%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.258e-01	1.0000	1211.0	1.88%	1184.8	1.91%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-3.195e-01	1.0000	1743.0	2.70%	1700.2	2.74%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.739e-01	1.0000	7570.0	11.73%	7336.9	11.82%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.484e-01	1.0000	467.0	0.72%	465.3	0.75%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.981e-01	1.0000	891.0	1.38%	883.3	1.42%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.959e-01	1.0000	1738.0	2.69%	1708.7	2.75%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.921e-01	1.0000	6832.0	10.58%	6641.3	10.70%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.835e-01	1.0000	14827.0	22.97%	14359.3	23.13%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.713e-01	1.0000	398.0	0.62%	402.6	0.65%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.399e-01	1.0000	1422.0	2.20%	1408.3	2.27%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-1.317e-01	1.0000	2100.0	3.25%	2070.2	3.33%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.222e-01	1.0000	15263.0	23.64%	14804.7	23.84%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.123e-01	1.0000	6288.0	9.74%	6138.2	9.89%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.061e-01	1.0000	231.0	0.36%	241.5	0.39%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.059e-01	1.0000	224.0	0.35%	234.3	0.38%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-9.573e-02	1.0000	562.0	0.87%	571.2	0.92%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-8.661e-02	1.0000	2843.0	4.40%	2804.3	4.52%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-8.224e-02	1.0000	140.0	0.22%	151.5	0.24%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-7.472e-02	1.0000	84.0	0.13%	94.6	0.15%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-7.372e-02	1.0000	5769.0	8.94%	5651.8	9.10%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-7.145e-02	1.0000	15192.0	23.53%	14765.7	23.78%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-6.045e-02	1.0000	25.0	0.04%	32.8	0.05%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-6.006e-02	1.0000	1037.0	1.61%	1046.5	1.69%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-4.940e-02	1.0000	66.0	0.10%	78.0	0.13%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-4.820e-02	1.0000	5581.0	8.64%	5483.0	8.83%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-2.923e-02	1.0000	10507.0	16.28%	10277.6	16.55%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.735e-02	1.0000	225.0	0.35%	245.8	0.40%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.309e-02	1.0000	5823.0	9.02%	5741.4	9.25%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.647e-02	1.0000	346.0	0.54%	372.3	0.60%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-1.637e-02	1.0000	7095.0	10.99%	6988.1	11.25%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.443e-02	1.0000	9632.0	14.92%	9455.1	15.23%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.408e-02	1.0000	9293.0	14.39%	9127.9	14.70%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.261e-02	1.0000	4559.0	7.06%	4526.2	7.29%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-1.208e-02	1.0000	13524.0	20.95%	13232.9	21.31%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.163e-02	1.0000	110.0	0.17%	130.8	0.21%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.129e-02	1.0000	108.0	0.17%	128.8	0.21%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-9.882e-03	1.0000	1383.0	2.14%	1415.0	2.28%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-9.304e-03	1.0000	63.0	0.10%	80.4	0.13%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-8.950e-03	1.0000	493.0	0.76%	526.3	0.85%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-8.887e-03	1.0000	5845.0	9.05%	5789.7	9.32%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-7.390e-03	1.0000	4143.0	6.42%	4132.7	6.66%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-7.337e-03	1.0000	4012.0	6.21%	4004.4	6.45%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-6.736e-03	1.0000	11579.0	17.94%	11369.5	18.31%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-5.730e-03	1.0000	172.0	0.27%	199.2	0.32%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-4.738e-03	1.0000	2847.0	4.41%	2870.7	4.62%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.466e-03	1.0000	219.0	0.34%	251.6	0.41%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-3.059e-03	1.0000	1594.0	2.47%	1639.8	2.64%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-2.507e-03	1.0000	10114.0	15.67%	9978.0	16.07%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-2.425e-03	1.0000	11773.0	18.24%	11590.8	18.67%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.162e-03	1.0000	23399.0	36.24%	22840.5	36.79%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.131e-03	1.0000	529.0	0.82%	574.1	0.92%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.909e-03	1.0000	29639.0	45.91%	28858.3	46.48%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.611e-03	1.0000	992.0	1.54%	1045.1	1.68%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.384e-03	1.0000	2076.0	3.22%	2128.2	3.43%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.304e-03	1.0000	11163.0	17.29%	11016.4	17.74%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-9.700e-04	1.0000	1182.0	1.83%	1241.9	2.00%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-6.840e-04	1.0000	6327.0	9.80%	6320.0	10.18%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-6.430e-04	1.0000	1472.0	2.28%	1536.9	2.48%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.690e-04	1.0000	327.0	0.51%	374.6	0.60%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-3.560e-04	1.0000	6264.0	9.70%	6272.3	10.10%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-3.300e-04	1.0000	8739.0	13.54%	8692.8	14.00%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-3.130e-04	1.0000	1599.0	2.48%	1671.6	2.69%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.530e-04	1.0000	235.0	0.36%	283.6	0.46%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.210e-04	1.0000	1583.0	2.45%	1665.4	2.68%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.140e-04	1.0000	3062.0	4.74%	3140.2	5.06%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-6.900e-05	1.0000	2542.0	3.94%	2630.8	4.24%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-4.800e-05	1.0000	180.0	0.28%	228.6	0.37%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-3.900e-05	1.0000	806.0	1.25%	887.7	1.43%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-3.400e-05	1.0000	1653.0	2.56%	1748.7	2.82%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.700e-05	1.0000	243.0	0.38%	301.4	0.49%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.400e-05	1.0000	6598.0	10.22%	6660.7	10.73%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-1.200e-05	1.0000	6127.0	9.49%	6199.4	9.98%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.000e-05	1.0000	1923.0	2.98%	2032.6	3.27%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-7.000e-06	1.0000	491.0	0.76%	570.8	0.92%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.000e-06	1.0000	3269.0	5.06%	3391.2	5.46%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-3.000e-06	1.0000	1559.0	2.41%	1676.8	2.70%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.000e-06	1.0000	785.0	1.22%	884.2	1.42%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.000e-06	1.0000	3467.0	5.37%	3598.2	5.79%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.000e-06	1.0000	760.0	1.18%	862.6	1.39%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.000e-06	1.0000	1328.0	2.06%	1450.8	2.34%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.000e-06	1.0000	7540.0	11.68%	7638.5	12.30%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-0.000e+00	1.0000	3388.0	5.25%	3533.0	5.69%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-0.000e+00	1.0000	1730.0	2.68%	1871.5	3.01%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-0.000e+00	1.0000	366.0	0.57%	453.6	0.73%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-0.000e+00	1.0000	534.0	0.83%	635.8	1.02%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	5746.0	8.90%	5899.1	9.50%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-0.000e+00	1.0000	2583.0	4.00%	2745.0	4.42%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-0.000e+00	1.0000	6358.0	9.85%	6506.1	10.48%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-0.000e+00	1.0000	1121.0	1.74%	1255.7	2.02%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-0.000e+00	1.0000	2093.0	3.24%	2252.8	3.63%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-0.000e+00	1.0000	314.0	0.49%	405.9	0.65%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-0.000e+00	1.0000	9940.0	15.40%	10054.5	16.19%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-0.000e+00	1.0000	7918.0	12.26%	8069.8	13.00%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-0.000e+00	1.0000	1523.0	2.36%	1686.7	2.72%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-0.000e+00	1.0000	3421.0	5.30%	3612.4	5.82%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-0.000e+00	1.0000	1735.0	2.69%	1906.2	3.07%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-0.000e+00	1.0000	3273.0	5.07%	3467.5	5.58%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-0.000e+00	1.0000	9890.0	15.32%	10032.0	16.16%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-0.000e+00	1.0000	699.0	1.08%	831.5	1.34%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-0.000e+00	1.0000	5730.0	8.88%	5948.1	9.58%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-0.000e+00	1.0000	6167.0	9.55%	6384.5	10.28%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-0.000e+00	1.0000	734.0	1.14%	887.3	1.43%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	10365.0	16.06%	10568.9	17.02%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-0.000e+00	1.0000	7310.0	11.32%	7557.6	12.17%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-0.000e+00	1.0000	4099.0	6.35%	4370.7	7.04%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-0.000e+00	1.0000	2497.0	3.87%	2749.6	4.43%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-0.000e+00	1.0000	2505.0	3.88%	2771.6	4.46%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-0.000e+00	1.0000	6549.0	10.14%	6908.2	11.13%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-0.000e+00	1.0000	2812.0	4.36%	3134.9	5.05%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	0.000e+00	1.0000	3876.0	6.00%	4244.5	6.84%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	14917.0	23.11%	17003.5	27.38%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	0.000e+00	1.0000	4292.0	6.65%	5073.5	8.17%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	17949.0	27.80%	19333.8	31.14%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	5043.0	7.81%	5700.2	9.18%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	7484.0	11.59%	8083.8	13.02%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	0.000e+00	1.0000	15186.0	23.52%	15887.5	25.59%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	4011.0	6.21%	4960.3	7.99%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	5492.0	8.51%	7597.1	12.24%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	9389.0	14.54%	11961.8	19.26%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	3429.0	5.31%	5122.2	8.25%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	290.0	0.45%	823.5	1.33%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	3198.0	4.95%	4448.1	7.16%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	0.000e+00	1.0000	7004.0	10.85%	8167.5	13.15%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	3936.0	6.10%	5324.9	8.58%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	18290.0	28.33%	19207.8	30.93%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	11632.0	18.02%	13103.2	21.10%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	14587.0	22.59%	15114.5	24.34%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	0.000e+00	1.0000	3182.0	4.93%	3679.5	5.93%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	1149.0	1.78%	1941.7	3.13%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	197.0	0.31%	338.9	0.55%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	30791.0	47.69%	32187.8	51.84%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	18302.0	28.35%	18663.4	30.06%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	0.000e+00	1.0000	3793.0	5.88%	4147.3	6.68%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	0.000e+00	1.0000	5816.0	9.01%	6335.9	10.20%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	0.000e+00	1.0000	4886.0	7.57%	5353.0	8.62%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	0.000e+00	1.0000	4422.0	6.85%	5388.8	8.68%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	2601.0	4.03%	3026.8	4.87%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	929.0	1.44%	1288.3	2.07%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	597.0	0.92%	1004.4	1.62%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	0.000e+00	1.0000	6945.0	10.76%	7862.0	12.66%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	0.000e+00	1.0000	6179.0	9.57%	7276.1	11.72%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	19481.0	30.18%	20680.3	33.31%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	0.000e+00	1.0000	6384.0	9.89%	6931.6	11.16%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	1960.0	3.04%	2464.8	3.97%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	0.000e+00	1.0000	11571.0	17.92%	11969.4	19.28%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	4869.0	7.54%	5497.0	8.85%