Beadstring Results

Dataset and Motifs

Motif Diagrams

Annotated Sequences

Debugging Information

Beadstring Results

Beadstring - Motif search tool

Beadstring version , (Release date: )

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the Beadstring software please access https://meme-suite.org.

REFERENCE

If you use this program in your research, please cite:

William N. Grundy, Timothy L. Bailey, Charles P. Elkan and Michael E. Baker. "Meta-MEME: Motif-based Hidden Markov Models of Protein Families", Computer Applications in the Biological Sciences (CABIOS), Vol. 13, pp. 397-406, 1997.

MODEL

DATABASE AND MOTIFS

        DATABASE 
        
        Database contains 
        
        sequences,
        
        residues
      
        MOTIFS 
        
        ()
        
            MOTIF
            WIDTH
            
              BEST POSSIBLE MATCH
            
        Random model letter frequencies 
        (from ):

DEBUGGING INFORMATION

Command line:

Settings:

This information can be useful in the event you wish to report a problem with the Beadstring software.

SECTION I: HIGH-SCORING MOTIF OCCURENCES

Each of the following motif occurrences has q-value less then E-value less then
The p-value of a motif occurrence is defined as the probability of a random sequence of the same length as the motif matching that position of the sequence with as good or better a score.
The score for the match of a position in a sequence to a motif is computed by by summing the appropriate entries from each column of the position-dependent scoring matrix that represents the motif.

The q-value of a motif occurrence is defined as the false discovery rate if the occurrence is accepted as significant.

The table is sorted by increasing p-value.
If the start position is larger then the end position, the motif occurrence is on the reverse strand.

Links	Motif	Sequence Name	Start	End	p-value	q-value
D A ?
D A ?

SECTION II: MOTIF DIAGRAMS

Name

Motifs

SCALE

+ -

white aqua blue red fuchsia yellow lime teal #444444 green silver purple olive navy maroon black black black white black black black black white white black black white white white white white

SECTION III: SEQUENCE/MOTIF ANNOTATIONS

S D ?

Length =

String Length =

DEBUGGING INFORMATION

Command line:

Settings:

This information can be useful in the event you wish to report a problem with the FIMO software.

SECTION II: MOTIF DIAGRAMS

Name

Motifs

motif name starting= ending=

SCALE

Button Help

S Links to motif occurences table(SECTION I)
D Links to motif occurences diagram (SECTION II)
A Links to sequence/motif annotated alignments (SECTION III)
? This information

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