FastQCFastQC Report
Tue 6 Aug 2024
trimmed_SRR1044425_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filenametrimmed_SRR1044425_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10086975
Sequences flagged as poor quality0
Sequence length0-51
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCACTGCTAAATTTGACTGGCTTTCACT6047025.99487953524223No Hit
TATTGCACTTGTCCCGGCCTGTTCACT4904774.862478592442233No Hit
TAGCTTATCAGACTGATGTTGATCACT4048754.013839629819644No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACTCACT3373613.344521028355875No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAAAACTTCACT2964322.938760133736824No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACTTCACT2839912.815422859677951No Hit
TAGCTTATCAGACTGATGTTGACTCACT2497472.4759355505490994No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAAAACTCACT2313422.2934725227335253No Hit
CATTGCACTTGTCTCGGTCTGATCACT1967841.9508722882727476No Hit
TTCAAGTAATCCAGGATAGGCTTCACT1590751.5770337489683477No Hit
TCCTGTACTGAGCTGCCCCGAGTCACT1498451.4855296062496437No Hit
AAACCGTTACCATTACTGAGTTCACT1438511.4261064392446696No Hit
TGAGGTAGTAGGTTGTATAGTTTCACT1417931.4057038904131318No Hit
TGAGGTAGTAGATTGTATAGTTTCACT1356981.3452794321389712No Hit
AAACCGTTACCATTACTGAGTTTCACT994840.9862619863735163No Hit
TGAGGTAGTAGTTTGTGCTGTTTCACT963720.9554103187526488No Hit
TCCTGTACTGAGCTGCCCCGATCACT911400.9035414482538124No Hit
TCAGTGCACTACAGAACTTTGTTCACT874200.8666622054679427No Hit
AAGCTGCCAGTTGAAGAACTGTTCACT785010.7782412467563368No Hit
TGAGGTAGTAGTTTGTACAGTTTCACT739550.733173225868013No Hit
TGAGAACTGAATTCCATGGGTTTCACT721790.7155663615702428No Hit
TGTCAGTTTGTCAAATACCCCATCACT716600.7104211123751174No Hit
TTCAAGTAATTCAGGATAGGTTTCACT705290.6992086329152198No Hit
TAGCAGCACGTAAATATTGGCGTCACT684290.6783897055360998No Hit
TCGTACCGTGAGTAATAATGCGTCACT682120.6762384163735906No Hit
TACAGTACTGTGATAACTGAAGTCACT632070.6266199727866878No Hit
TGAGGTAGTAGGTTGTGTGGTTTCACT585870.5808183325526236No Hit
CTAGACTGAAGCTCCTTGAGGTCACT564670.5598011296746547No Hit
CATTATTACTTTTGGTACGCGTCACT551750.5469925324490246No Hit
TGTAAACATCCCCGACTGGAAGCTCACT550050.5453071907088101No Hit
TGTGCAAATCCATGCAAAACTGTCACT507950.5035701982011456No Hit
CCCCCCACTGCTAAATTTGACTGGCTTTTCACT489250.4850314390587862No Hit
TTCACAGTGGCTAAGTTCCGCTCACT485100.4809172224576744No Hit
AGCTACATTGTCTGCTGGGTTTCTCACT405520.40202340146575166No Hit
TCAGTGCATCACAGAACTTTGTTCACT387670.38432731319349955No Hit
AGCTTATCAGACTGATGTTGACTCACT387130.38379196934660786No Hit
TGGAGAGAAAGGCAGTTCCTGATCACT381230.3779428421305694No Hit
CGTACCGTGAGTAATAATGCGTCACT363130.3599989094847563No Hit
TGAGGTAGTAGGTTGTATAGTTCACT356110.35303943947516475No Hit
TGTGCAAATCCATGCAAAACTGATCACT346490.3435023879805393No Hit
TCCTGTACTGAGCTGCCCCGAGATCACT328360.3255287140098989No Hit
CCCCCCACTGCTAAATTTGACTGGCTTATCACT320080.31732010835756014No Hit
AACATTCAACGCTGTCGGTGAGTTCACT314480.31176839438979476No Hit
TCCTGTACTGAGCTGCCCCGAGTTCACT305650.3030145311156219No Hit
AGCAGCATTGTACAGGGCTATGATCACT305130.3024990148186151No Hit
CAACGGAATCCCAAAAGCAGCTTCACT293310.29078093283665324No Hit
CTAGACTGAAGCTCCTTGAGGATCACT280720.2782994901841236No Hit
AAAAGCTGGGTTGAGAGGGCGATCACT269510.2671861484736504No Hit
ATCACATTGCCAGGGATTTCCATCACT267530.26522322103504764No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACTTTCACT259850.2576094418792552No Hit
AGAGGTAGTAGGTTGCATAGTTTCACT248570.24642670374418496No Hit
TGCGGGGCTAGGGCTAACAGCATCACT245510.24339308861179887No Hit
CACTAGATTGTGAGCTCCTGGATCACT234630.2326069014744262No Hit
TGAGGTAGTAGATTGTATAGTTCACT234320.2322995744512106No Hit
ATTGCACTTGTCCCGGCCTGTTCACT219330.21743882581249582No Hit
ACAGTAGTCTGCACATTGGTTATCACT215570.21371124643413908No Hit
AGCTCGGTCTGAGGCCCCTCAGTTCACT215110.21325521278678694No Hit
TGTAAACATCCCCGACTGGAAGTCACT207260.205472899456973No Hit
AGCTACATTGTCTGCTGGGTTTTCACT204490.20272678379791761No Hit
TGAGGTAGTAGGTTGTGTGGTTCACT204420.20265738737332054No Hit
TTATGGTTTGCCTGGGACTGATCACT200790.1990586870692155No Hit
TGTAAACATCCTTGACTGGAAGCTCACT199590.1978690340761229No Hit
TTCAAGTAATCCAGGATAGGCTTTCACT190130.18849060298057643No Hit
ATCACATTGCCAGGGATTTCCTCACT186750.18513974705003233No Hit
GTACAGTACTGTGATAACTGAATCACT185160.18356345683418468No Hit
CTTTCAGTCGGATGTTTACAGTTCACT178380.17684191742321162No Hit
GTACAGTACTGTGATAACTGATCACT174500.1729953727455456No Hit
TGAGATGAAGCACTGTAGCTCTCACT173780.17228158094969007No Hit
CCCCCCACTGCTAAATTTGACTGGCTTTTTCACT173660.17216261565038082No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAAAACTTTCACT169600.16813762302375093No Hit
TGAGGTAGTAGGTTGTGTGGTTTTCACT165130.1637061656244811No Hit
TACAGTACTGTGATAACTGAATCACT164830.16340875237620792No Hit
TGGCTCAGTTCAGCAGGAACAGTTCACT163340.16193159990978465No Hit
TGAGGTAGTAGGTTGTATAGTTTTCACT159690.15831307205579473No Hit
AAACCGTTACCATTACTGAGTCACT157110.1557553181206457No Hit
CCCATAAAGTAGAAAGCACTACTCACT155320.15398075240594927No Hit
CAACGGAATCCCAAAAGCAGCTGTCACT155250.1539113559813522No Hit
TGTAAACATCCCCGACTGGAAGCTTTCACT154830.15349497743376977No Hit
TATTGCACTTGTCCCGGCCTGTCACT151620.15031265567724714No Hit
TACAGTACTGTGATAACTGATCACT146870.145603612579589No Hit
TAGCTTATCAGACTGATGTTGTCACT140570.13935793436585298No Hit
TGAGGGGCAGAGAGCGAGACTTTTCACT140110.13890190071850084No Hit
GCTGGTCCGATGGTAGTGGGTTATCAGAACTTCACT139660.13845578084609114No Hit
CTAGACTGAAGCTCCTTGAGGTTCACT138920.1377221615003507No Hit
TGAGATGAAGCACTGTAGCTCTTCACT137380.13619544015921523No Hit
TTCACAGTGGCTAAGTTCTGCTCACT133640.13248768833074334No Hit
TCGAGGAGCTCACAGTCTAGTATCACT133390.1322398439571824No Hit
TACCCTGTAGATCCGAATTTGTTCACT133050.13190277560913952No Hit
TGAGGTAGTAGTTTGTGCTGTTTTCACT132750.13160536236086637No Hit
TGAGGTAGTAGTTTGTGCTGTTCACT130860.12973165889674554No Hit
GCTGGTCCGATGGTAGTGGGTTATCAGAACTCACT128750.1276398523838911No Hit
CACCCGTAGAACCGACCTTGCGTCACT128740.12762993860894867No Hit
TCGAGGAGCTCACAGTCTAGTTCACT128450.12734243913561796No Hit
TGAGGTAGTAGGTTGTATAGTCACT127830.1267277850891868No Hit
CTATACGACCTGCTGCCTTTCTTCACT124470.12339675670852758No Hit
TTCAAGTAATCCAGGATAGGCTCACT119730.11869762738581191No Hit
TGTGCAAATCTATGCAAAACTGATCACT119670.11863814473615727No Hit
TAAAGTGCTGACAGTGCAGATTCACT118950.11792435294030172No Hit
CCCCCACTGCTAAATTTGACTGGCTTTCACT118080.1170618545203096No Hit
TCCTGTACTGAGCTGCCCCGTCACT116870.11586228775227458No Hit
TGTCAGTTTGTCAAATACCCCTCACT116490.11548556430446195No Hit
ACCACAGGGTAGAACCACGGACTCACT114600.11361186084034114No Hit
GGCTGGTCCGATGGGAGTGGGTTATCAGAACTTCACT113400.11242220784724855No Hit
TGAGGTAGTAGTTTGTACAGTTCACT111830.11086574518128577No Hit
AGTTGGTCCGAGTGTTGTGGGTTATTGTTCACT111180.11022134981002729No Hit
TACAGTACTGTGATAACTGAATTCACT110750.10979505748750244No Hit
GTAGTGTTTCCTACTTTATGGATCACT109280.10833773257096405No Hit
ACAGTAGTCTGCACATTGGTTTCACT107860.10692997652913784No Hit
TGTAAACATCCCCGACTGGATCACT106570.1056510995615633No Hit
GGCTGGTCCGATGGGAGTGGGTTATCAGAACTCACT105840.10492739399076531No Hit
TGTAGTGTTTCCTACTTTATGGTCACT105050.1041442057703127No Hit
AGCTACATCTGGCTACTGGGTCTCTTCACT102850.10196317528297631No Hit
TATTGCACTTGTCCCGGCCTGATCACT102630.10174507223424267No Hit
CGTACCGTGAGTAATAATGCGTTCACT102450.1015666242852788No Hit
GGCTGGTCCGATGGGAGTGGGTTATCAAAACTTCACT102350.10146748653585441No Hit
TGAGAACTGAATTCCATGGGTTTTCACT102230.10134852123654516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)