FastQCFastQC Report
Tue 6 Aug 2024
trimmed_SRR1044426_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filenametrimmed_SRR1044426_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2490404
Sequences flagged as poor quality0
Sequence length0-51
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTGGTGGTTCAGTGGTAGAATTCTCGCTCACT1955627.852621502374715No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACTTCACT866933.4810817843209376No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACTCACT843013.3850331110936214No Hit
TATTGCACTTGTCCCGGCCTGTTCACT838093.365277280312753No Hit
CCCCCCACTGCTAAATTTGACTGGCTTTCACT562162.257304437352333No Hit
TAGCATATCGAGCCTGAGAACATCACT540152.1689252024972654No Hit
CATCGGTCGAACTTATGTGAAATCACT496961.9954995253782117No Hit
TCCTGTACTGAGCTGCCCCGAGTCACT374121.5022462218981338No Hit
TGATACGGATGTTATACGCAGCTCACT356891.433060660037488No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAAAACTTCACT347231.3942717727726104No Hit
TAGCTTATCAGACTGATGTTGATCACT323471.298865565586949No Hit
CATTGCACTTGTCTCGGTCTGATCACT313841.2601971407048818No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTCACT286381.1499339063059648No Hit
AGGTTCCGGATAAGTAAGAGCCTCACT258951.0397911342898583No Hit
TCCTGTACTGAGCTGCCCCGATCACT243310.9769900787181518No Hit
TGTCAGTTTGTCAAATACCCCATCACT225340.9048331114148548No Hit
AAACCGTTACCATTACTGAGTTCACT203500.8171364967290448No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAAAACTCACT198270.7961358879924703No Hit
AAACCGTTACCATTACTGAGTTTCACT176260.7077566531374025No Hit
GTCCCACTCCGTAGATCTGTTCTCACT175280.7038215486322701No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGTCACT162180.6512196414718254No Hit
TAGCTTATCAGACTGATGTTGACTCACT144850.5816325383351456No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCACT140800.5653701166557715No Hit
GATGTAACGAGTTGGAATGCAATCACT133920.5377440768646372No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCGCTCACT129940.521762734078487No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTTCACT124740.5008825877247226No Hit
TAGCAGCACGTAAATATTGGCGTCACT123560.4961444006675222No Hit
TCAGTGCACTACAGAACTTTGTTCACT121310.48710972195675883No Hit
TCTTAACCCGGACCAGAAACTATCACT119610.48028352026418203No Hit
TGAGGTAGTAGGTTGTATAGTTTCACT114780.46088907663174333No Hit
TCCTGTACTGAGCTGCCCCGAGATCACT107120.43013101488754435No Hit
TGAGGTAGTAGGTTGTGTGGTTTCACT105320.4229032719189336No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACTTTCACT99750.4005374228438438No Hit
TTCAAGTAATCCAGGATAGGCTTCACT96250.3864834781826563No Hit
TGTCAGTTTGTCAAATACCCCAATCACT82030.3293843087306317No Hit
TGAGGTAGTAGATTGTATAGTTTCACT80660.32388319324896686No Hit
TGTCAGTTTGTCAAATACCCCATTCACT74220.29802393507238184No Hit
TACAGTACTGTGATAACTGAAGTCACT69700.27987426939564825No Hit
AAGCTGCCAGTTGAAGAACTGTTCACT62930.2526899250081513No Hit
TGAGGTAGTAGGTTGTGTGGTTCACT62860.25240884611492753No Hit
TATTGCACTTGTCCCGGCCTGTCACT61840.24831312509938147No Hit
CATTATTACTTTTGGTACGCGTCACT61760.24799189207855432No Hit
CCCCCCACTGCTAAATTTGACTGGCTTTTCACT60330.24224985183126913No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCTCACT56750.22787467414925447No Hit
AGCAGCATTGTACAGGGCTATGATCACT56640.2274329787456172No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTTTCACT56270.22594727602429165No Hit
TTCAAGTAATTCAGGATAGGTTTCACT52320.21008639562095144No Hit
AGCTACATTGTCTGCTGGGTTTCTCACT50110.20121233342060163No Hit
TCCTGTACTGAGCTGCCCCGAGTTCACT49220.19763861606389965No Hit
GTCCCCCTCCGTAGATCTGTTCTCACT48930.1964741463634013No Hit
TGAGGTAGTAGGTTGTATAGTTCACT47940.1924988877306654No Hit
TGAGGTAGTAGTTTGTACAGTTTCACT46860.18816224194949896No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTGGCTCACT45410.182339893447007No Hit
TGAGGTAGTAGTTTGTGCTGTTTCACT44340.17804340179344397No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCTCACT44260.17772216877261682No Hit
CAAATTGTCGCGGCGATCACT43680.17539322937162002No Hit
CAACGGAATCCCAAAAGCAGCTTCACT42620.1711368918456604No Hit
CCCCCCACTGCTAAATTTGACTGGCTTATCACT39490.15856864990579841No Hit
GATGTCACGAGTTGGAATGCAATCACT38680.1553161655699236No Hit
TGTAAACATCCCCGACTGGAAGCTCACT38210.15342892157256413No Hit
TGAGAACTGAATTCCATGGGTTTCACT38150.15318799680694375No Hit
TGTGCAAATCCATGCAAAACTGATCACT38080.15290691791372002No Hit
TTCACAGTGGCTAAGTTCCGCTCACT37940.15234476012727252No Hit
TCAGTGCATCACAGAACTTTGTTCACT36380.14608071622114324No Hit
TGTGCAAATCCATGCAAAACTGTCACT36250.14555871256229913No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTNGCTCACT36120.14503670890345502No Hit
CGTACCGTGAGTAATAATGCGTCACT35010.14057960073947842No Hit
TAGCTTATCAGACTGATGTTGTCACT34960.14037883010146146No Hit
TAGGTTGAGGCCGTTGAGCTCACT34460.13837112372129182No Hit
CCCCCACTGCTAAATTTGACTGGCTTTCACT34110.13696572925517306No Hit
GCATTTGTGGTTCAGTGGTAGAATTCTCGCTCACT33280.13363293666409146No Hit
CAACGGAATCCCAAAAGCAGCTGTCACT33230.1334321660260745No Hit
TAACTCCTTAAGCGAATCTCGCTCACT32920.1321873880703693No Hit
TGAGGTAGTAGGTTGTGTGGTTTTCACT32700.13130399726309466No Hit
AAGGAGCTGACTGGGTTCACT32320.12977814041416574No Hit
AGCTACATTGTCTGCTGGGTTTTCACT31870.12797120467201306No Hit
TATTGCACTTGTCCCGGCCTGATCACT31870.12797120467201306No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACATCACT31330.12580288178142984No Hit
TGTCAGTTTGTCAAATACCCCTCACT30780.12359440476324324No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCTCACT30690.12323301761481269No Hit
TGGAGAGAAAGGCAGTTCCTGATCACT30320.12174731489348715No Hit
ATTGCACTTGTCCCGGCCTGTTCACT29910.12010099566174806No Hit
TGAGGGGCAGAGAGCGAGACTTTTCACT29870.11994037915133449No Hit
GCGGGCGTAGTTCAATGGTAGAACGAGATCACT29770.11953883787530055No Hit
TCGTACCGTGAGTAATAATGCGTCACT29040.11660758656025288No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTTCACT28600.1148408049457036No Hit
ATCACATTGCCAGGGATTTCCATCACT28060.11267248205512037No Hit
TCCTGTACTGAGCTGCCCCGTCACT27870.11190955363065591No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAAAACATCACT27730.11134739584420841No Hit
CTAGACTGAAGCTCCTTGAGGTCACT27300.10962076835726252No Hit
ATCACATTGCCAGGGATTTCCTCACT26950.10821537389114376No Hit
TGAGGTAGTAGGTTGTATAGTCACT26480.10632812989378429No Hit
AAACCGTTACCATTACTGAGTTTTCACT25930.1041196528755977No Hit
CAAAGTGCTGTTCGTGCAGGTAGTCACT25340.10175055934699752No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTCACT24970.10026485662567197No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)