FastQCFastQC Report
Tue 6 Aug 2024
trimmed_SRR1044428_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filenametrimmed_SRR1044428_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1300109
Sequences flagged as poor quality0
Sequence length0-51
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGGTCCGATGGTAGTGGGTTATCAGAACTCATC773535.949731907093944No Hit
AAACCGTTACCATTACTGAGTTCATC481793.7057662088332597No Hit
TATTGCACTTGTCCCGGCCTGTTCATC449973.461017499301981No Hit
TCCTGTACTGAGCTGCCCCGAGTCATC377772.905679446877146No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTGGCTCATC355652.735539866272751No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCTCATC319612.4583323398268915No Hit
AAACCGTTACCATTACTGAGTTTCATC296942.283962344695714No Hit
TCCTGTACTGAGCTGCCCCGATCATC222861.7141639662520605No Hit
CATTGCACTTGTCTCGGTCTGATCATC185121.4238806130870565No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAAAACTCATC178451.372577222371355No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCGCTCATC152381.172055573801889No Hit
TAGCTTATCAGACTGATGTTGATCATC139591.0736792068972678No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACTTCATC131551.0118382381784912No Hit
TCAGTGCACTACAGAACTTTGTTCATC123510.9499972694597146No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTCATC120690.9283067804314868No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAAAACTTCATC117320.9023858768764773No Hit
TAGCAGCACGTAAATATTGGCGTCATC96130.7393995426537314No Hit
TGAGGTAGTAGGTTGTGTGGTTTCATC80520.6193326867208826No Hit
TGAGGTAGTAGGTTGTGTGGTTCATC64050.49265100080070207No Hit
AAGCTGCCAGTTGAAGAACTGTTCATC62050.4772676752487676No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGACCTCATC56930.4378863618358153No Hit
TGGAGTGTGACAATGGTGTTTTCATC56270.4328098644036769No Hit
TGTCAGTTTGTCAAATACCCCATCATC55020.42319528593371786No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGTCATC47180.36289264977013463No Hit
TCCTGTACTGAGCTGCCCCGTCATC46700.3592006516376704No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCCCTCATC45270.34820157386803724No Hit
TACCCTGTAGAACCGAATTTGTTCATC44590.3429712431803795No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTGGTCATC39920.30705117801661247No Hit
TTCAAGTAATCCAGGATAGGCTTCATC39360.3027438468620708No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTTTCATC37470.2882066042154927No Hit
TGAGGTAGTAGGTTGTATAGTTTCATC37280.28674518828805895No Hit
AAACCGTTACCATTACTGAGTCATC36660.2819763573669592No Hit
TTCACAGTGGCTAAGTTCCGTCATC36290.27913044213985133No Hit
ATCACATTGCCAGGGATTTCCTCATC34270.2635932833323975No Hit
TACAGTATAGATGATGTACTTCATC33850.26036278496649123No Hit
CCCCCCACTGCTAAATTTGACTGGCTTTCATC33490.2575937863671431No Hit
CATTATTACTTTTGGTACGCGTCATC33400.25690153671730603No Hit
TGTAAACATCCCCGACTGGAAGTCATC31710.24390262662592138No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCATC31640.24336421023160365No Hit
TGAGGTAGTAGTTTGTGCTGTTTCATC31170.23974912872689905No Hit
TGAGAACTGAATTCCATGGGTTTCATC30180.2321343825786915No Hit
TGAGGTAGTAGGTTGTATAGTTCATC30080.23136521630109474No Hit
GCGGGCGTAGTTCAATGGTAGAACGAGATCATC30060.23121138304557542No Hit
AAGGAGCTGACTGGGTTCATC28860.2219813877144147No Hit
TATTGCACTTGTCCCGGCCTGTCATC27650.21267447575549436No Hit
TGAGGTAGTAGGTTGTGTGGTCATC25870.19898331601427266No Hit
TCGTACCGTGAGTAATAATGCGTCATC25670.19744498345907918No Hit
ATTGCACTTGTCCCGGCCTGTTCATC24800.19075323684398768No Hit
TGTAAACATCCCCGACTGGATCATC23880.18367690709009782No Hit
GCATGTGGTTCAGTGGTAGAATTCTCGCTCATC22900.17613907756964992No Hit
TACAGTACTGTGATAACTGAAGTCATC22690.1745238283866968No Hit
TAGCACCATCTGAAATCGGTTTCATC22520.17321624571478236No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTGCCTCATC22310.17160099653182925No Hit
ATCACATTGCCAGGGATTTCTCATC22110.1700626639766358No Hit
TTCAAGTAATTCAGGATAGGTTTCATC21780.1675244152605666No Hit
AGGGCTGGGTCGGTCGGGCTGGGGCGCGTCATC21730.16713983212176825No Hit
GGCTGGTCCGATGGGAGTGGGTTATCAGAACTCATC21340.164140083639141No Hit
TTCACAGTGGCTAAGTTCCGCTCATC20960.16121725178427346No Hit
TCCTGTACTGAGCTGCCCCGAGTTCATC20480.1575252536518092No Hit
TGTCAGTTTGTCAAATACCCCTCATC20360.15660225411869313No Hit
TGAGGTAGTAGTTTGTACAGTTTCATC20290.1560638377243754No Hit
CAAATTGTCGCGGCGATCATC19870.15283333935846918No Hit
CTAGACTGAAGCTCCTTGAGGTCATC19760.15198725645311278No Hit
CTGTACTGAGCTGCCCCGAGTCATC19700.15152575668655474No Hit
TACCCTGTAGATCCGAATTTGTTCATC19590.15067967378119834No Hit
TCAGTGCATCACAGAACTTTGTTCATC19360.14891059134272588No Hit
TGGCTCAGTTCAGCAGGAACTCATC18990.146064676115618No Hit
TCCTGTACTGAGCTGCCCCGAGATCATC18350.14114201193899897No Hit
TGAGGTAGTAGGTTGTATAGTCATC18050.13883451310620878No Hit
GAGAGCGTCGAGATCCCGGACACCATCGTCATC17660.13583476462358157No Hit
TGAGGTAGTAGATTGTATAGTTTCATC17500.1346040985794268No Hit
CGTACCGTGAGTAATAATGCGTCATC17070.13129668358576088No Hit
CAACGGAATCCCAAAAGCAGCTTCATC16650.12806618521985466No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTGGCCTCATC16570.12745085219777727No Hit
TAAAGTGCTGACAGTGCAGATCATC16480.1267586025479402No Hit
TGGAGAGAAAGGCAGTTCCTGATCATC15950.12268202127667757No Hit
TTTGTTCGTTCGGCTCGCGTGATCATC15230.11714402407798116No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTTCATC15010.11545185826726835No Hit
TGGAGTGTGACAATGGTGTTTGTCATC14830.11406735896759426No Hit
TGAGGTAGTAGTTTGTGCTGTTCATC14820.11399044233983459No Hit
AGGGCTGGGTCGGTCGGGCTGGGGCTCATC14690.11299052617895883No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCGTCATC13860.10660644607490602No Hit
TGAGGTAGTAGATTGTATAGTTCATC13430.10329903108124011No Hit
TCAGTGCACTACAGAACTTTGTCATC13290.1022221982926047No Hit
CATGCAACTCGTAGGACAGGTGCCGTCATC13120.10091461562069028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)