Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 12993)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 34666)	% of Background Sequences with Motif
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-43	-1.001e+02	0.0000	5657.0	43.54%	13024.1	37.57%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-42	-9.704e+01	0.0000	5616.0	43.22%	12950.9	37.36%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-39	-9.086e+01	0.0000	5223.0	40.20%	11998.5	34.61%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-39	-9.077e+01	0.0000	3504.0	26.97%	7640.0	22.04%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-34	-7.959e+01	0.0000	8747.0	67.32%	21530.6	62.11%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-29	-6.778e+01	0.0000	4311.0	33.18%	9916.5	28.61%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-29	-6.703e+01	0.0000	7452.0	57.35%	18168.8	52.41%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-25	-5.969e+01	0.0000	685.0	5.27%	1193.2	3.44%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-24	-5.753e+01	0.0000	10554.0	81.22%	26857.9	77.48%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-23	-5.309e+01	0.0000	9639.0	74.18%	24342.1	70.22%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-22	-5.278e+01	0.0000	9762.0	75.13%	24689.2	71.23%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-22	-5.254e+01	0.0000	4850.0	37.32%	11501.1	33.18%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-22	-5.143e+01	0.0000	1739.0	13.38%	3685.5	10.63%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-20	-4.813e+01	0.0000	10315.0	79.38%	26303.9	75.88%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-19	-4.564e+01	0.0000	8140.0	62.64%	20340.7	58.68%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-18	-4.346e+01	0.0000	1882.0	14.48%	4110.0	11.86%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-16	-3.740e+01	0.0000	4700.0	36.17%	11344.3	32.73%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-15	-3.660e+01	0.0000	8988.0	69.17%	22803.1	65.78%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-15	-3.601e+01	0.0000	6071.0	46.72%	14967.9	43.18%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-15	-3.551e+01	0.0000	9716.0	74.77%	24825.8	71.62%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-15	-3.475e+01	0.0000	10894.0	83.84%	28130.3	81.15%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-15	-3.457e+01	0.0000	901.0	6.93%	1837.2	5.30%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-15	-3.455e+01	0.0000	8534.0	65.68%	21601.8	62.32%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-14	-3.375e+01	0.0000	6410.0	49.33%	15908.8	45.89%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-14	-3.309e+01	0.0000	10989.0	84.57%	28424.1	82.00%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-14	-3.308e+01	0.0000	4908.0	37.77%	11963.0	34.51%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-13	-3.202e+01	0.0000	7934.0	61.06%	20023.9	57.77%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-13	-3.148e+01	0.0000	834.0	6.42%	1705.3	4.92%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-13	-3.108e+01	0.0000	5636.0	43.37%	13911.9	40.13%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-13	-3.022e+01	0.0000	2099.0	16.15%	4805.5	13.86%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-12	-2.945e+01	0.0000	870.0	6.70%	1807.2	5.21%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-12	-2.851e+01	0.0000	4839.0	37.24%	11868.2	34.24%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-12	-2.807e+01	0.0000	12090.0	93.04%	31662.6	91.34%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-11	-2.692e+01	0.0000	948.0	7.30%	2016.6	5.82%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-11	-2.607e+01	0.0000	9238.0	71.09%	23687.0	68.33%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-10	-2.487e+01	0.0000	7928.0	61.01%	20155.6	58.15%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-10	-2.334e+01	0.0000	6501.0	50.03%	16367.7	47.22%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-9	-2.231e+01	0.0000	9019.0	69.41%	23169.3	66.84%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-9	-2.194e+01	0.0000	12804.0	98.54%	33894.2	97.78%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-9	-2.154e+01	0.0000	8259.0	63.56%	21125.3	60.94%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-9	-2.149e+01	0.0000	8266.0	63.61%	21145.8	61.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-9	-2.146e+01	0.0000	175.0	1.35%	283.7	0.82%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-9	-2.122e+01	0.0000	7523.0	57.90%	19150.8	55.25%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-9	-2.109e+01	0.0000	9382.0	72.20%	24187.3	69.78%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-8	-2.065e+01	0.0000	1786.0	13.74%	4160.2	12.00%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-8	-2.039e+01	0.0000	5055.0	38.90%	12610.6	36.38%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-8	-1.927e+01	0.0000	761.0	5.86%	1644.1	4.74%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-8	-1.878e+01	0.0000	2646.0	20.36%	6380.5	18.41%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-8	-1.872e+01	0.0000	705.0	5.43%	1515.4	4.37%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-8	-1.860e+01	0.0000	6387.0	49.15%	16180.5	46.68%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-7	-1.818e+01	0.0000	11330.0	87.19%	29636.8	85.50%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-7	-1.780e+01	0.0000	9581.0	73.73%	24808.7	71.57%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-7	-1.748e+01	0.0000	12756.0	98.17%	33778.2	97.45%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-7	-1.699e+01	0.0000	7532.0	57.97%	19283.1	55.63%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-7	-1.645e+01	0.0000	11794.0	90.76%	30977.8	89.37%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-7	-1.636e+01	0.0000	2984.0	22.96%	7303.0	21.07%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-7	-1.635e+01	0.0000	8463.0	65.13%	21808.1	62.91%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-6	-1.596e+01	0.0000	5664.0	43.59%	14332.9	41.35%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-6	-1.593e+01	0.0000	4143.0	31.88%	10328.3	29.80%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-6	-1.558e+01	0.0000	10446.0	80.39%	27235.8	78.57%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-6	-1.524e+01	0.0000	9363.0	72.06%	24279.6	70.04%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-6	-1.510e+01	0.0000	3598.0	27.69%	8926.6	25.75%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-6	-1.429e+01	0.0000	4944.0	38.05%	12477.9	36.00%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-5	-1.373e+01	0.0000	5865.0	45.14%	14930.6	43.07%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-5	-1.372e+01	0.0000	1039.0	8.00%	2397.2	6.92%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-5	-1.359e+01	0.0000	874.0	6.73%	1989.1	5.74%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-5	-1.296e+01	0.0000	781.0	6.01%	1768.6	5.10%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-5	-1.289e+01	0.0000	2468.0	18.99%	6050.5	17.45%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-5	-1.278e+01	0.0000	3230.0	24.86%	8028.3	23.16%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-5	-1.262e+01	0.0000	3955.0	30.44%	9926.3	28.64%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-5	-1.218e+01	0.0000	10498.0	80.79%	27464.8	79.23%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-5	-1.188e+01	0.0000	12828.0	98.72%	34053.3	98.24%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-5	-1.172e+01	0.0000	12686.0	97.63%	33624.6	97.00%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-5	-1.171e+01	0.0000	1343.0	10.34%	3196.8	9.22%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-5	-1.162e+01	0.0000	3248.0	25.00%	8107.8	23.39%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-5	-1.160e+01	0.0000	573.0	4.41%	1275.5	3.68%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-5	-1.159e+01	0.0000	4146.0	31.91%	10458.1	30.17%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-5	-1.157e+01	0.0000	7378.0	56.78%	19034.5	54.91%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-4	-1.150e+01	0.0000	3351.0	25.79%	8380.0	24.18%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-4	-1.079e+01	0.0001	4398.0	33.85%	11146.6	32.16%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-4	-1.049e+01	0.0001	2834.0	21.81%	7061.9	20.37%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-4	-1.041e+01	0.0001	1927.0	14.83%	4716.8	13.61%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-4	-1.035e+01	0.0001	5775.0	44.44%	14802.6	42.70%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-4	-1.023e+01	0.0001	1898.0	14.61%	4646.7	13.41%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-4	-1.013e+01	0.0001	5838.0	44.93%	14977.2	43.21%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-4	-1.006e+01	0.0001	5954.0	45.82%	15288.8	44.11%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-4	-1.005e+01	0.0001	10122.0	77.90%	26497.7	76.44%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-4	-9.782e+00	0.0002	1551.0	11.94%	3766.1	10.86%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-4	-9.265e+00	0.0003	9083.0	69.90%	23703.8	68.38%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-3	-9.174e+00	0.0003	9822.0	75.59%	25709.1	74.17%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-3	-8.377e+00	0.0007	4240.0	32.63%	10814.8	31.20%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-3	-8.298e+00	0.0007	6907.0	53.16%	17895.2	51.63%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-3	-8.178e+00	0.0008	4604.0	35.43%	11782.6	33.99%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-3	-8.050e+00	0.0009	10095.0	77.69%	26490.9	76.42%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-3	-8.043e+00	0.0009	2727.0	20.99%	6857.8	19.78%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-3	-8.042e+00	0.0009	3016.0	23.21%	7612.9	21.96%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-3	-7.973e+00	0.0009	2504.0	19.27%	6278.8	18.11%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-3	-7.886e+00	0.0010	10755.0	82.77%	28295.8	81.63%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-3	-7.858e+00	0.0010	12181.0	93.74%	32236.3	93.00%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-7.544e+00	0.0014	6942.0	53.42%	18020.4	51.99%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-3	-7.539e+00	0.0014	1713.0	13.18%	4239.0	12.23%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-3	-7.475e+00	0.0015	799.0	6.15%	1901.5	5.49%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-3	-7.333e+00	0.0017	1136.0	8.74%	2761.3	7.97%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-3	-7.024e+00	0.0023	9210.0	70.88%	24132.5	69.62%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-3	-6.948e+00	0.0024	7548.0	58.09%	19668.0	56.74%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-6.584e+00	0.0034	12664.0	97.46%	33630.3	97.02%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-6.551e+00	0.0035	2365.0	18.20%	5963.3	17.20%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-2	-6.518e+00	0.0036	10803.0	83.14%	28473.8	82.14%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-2	-6.490e+00	0.0037	8210.0	63.18%	21463.9	61.92%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-6.457e+00	0.0038	6051.0	46.57%	15693.1	45.27%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-2	-6.457e+00	0.0038	11132.0	85.67%	29374.9	84.74%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-6.451e+00	0.0038	1123.0	8.64%	2749.6	7.93%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2	-6.425e+00	0.0038	1862.0	14.33%	4658.4	13.44%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-2	-6.241e+00	0.0045	4751.0	36.56%	12252.7	35.35%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-2	-6.196e+00	0.0047	6676.0	51.38%	17371.5	50.11%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-2	-6.167e+00	0.0048	4718.0	36.31%	12168.3	35.10%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-2	-6.087e+00	0.0051	7123.0	54.82%	18570.2	53.57%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-5.744e+00	0.0072	7445.0	57.30%	19448.6	56.11%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2	-5.729e+00	0.0072	5276.0	40.60%	13668.4	39.43%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-5.689e+00	0.0074	12146.0	93.47%	32190.8	92.87%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-2	-5.286e+00	0.0110	5213.0	40.12%	13523.3	39.01%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-2	-5.087e+00	0.0134	2412.0	18.56%	6142.0	17.72%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-2	-4.963e+00	0.0150	9702.0	74.67%	25552.4	73.72%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-2	-4.958e+00	0.0150	6055.0	46.60%	15779.2	45.52%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-2	-4.918e+00	0.0154	8060.0	62.03%	21138.0	60.98%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-2	-4.857e+00	0.0163	622.0	4.79%	1506.7	4.35%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-2	-4.804e+00	0.0170	1983.0	15.26%	5030.0	14.51%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-4.600e+00	0.0207	5656.0	43.53%	14737.3	42.52%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-4.565e+00	0.0213	5203.0	40.04%	13535.3	39.05%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-4.506e+00	0.0224	1082.0	8.33%	2697.3	7.78%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-4.393e+00	0.0249	2925.0	22.51%	7519.3	21.69%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-4.381e+00	0.0250	3310.0	25.47%	8534.0	24.62%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-4.345e+00	0.0258	7241.0	55.73%	18978.4	54.75%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-4.301e+00	0.0267	7203.0	55.43%	18879.4	54.46%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-4.184e+00	0.0298	12508.0	96.26%	33236.0	95.88%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-4.121e+00	0.0315	1852.0	14.25%	4715.4	13.60%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-4.079e+00	0.0326	4800.0	36.94%	12493.0	36.04%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-4.012e+00	0.0346	2016.0	15.51%	5149.2	14.85%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-3.942e+00	0.0369	892.0	6.86%	2223.7	6.41%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-3.640e+00	0.0495	4235.0	32.59%	11021.9	31.80%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-3.560e+00	0.0533	5745.0	44.21%	15037.6	43.38%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-1	-3.485e+00	0.0570	138.0	1.06%	312.2	0.90%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-3.464e+00	0.0578	161.0	1.24%	369.0	1.06%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.458e+00	0.0578	1157.0	8.90%	2927.6	8.45%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-3.409e+00	0.0602	9813.0	75.52%	25934.2	74.82%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-3.309e+00	0.0661	10520.0	80.96%	27846.6	80.33%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-3.139e+00	0.0778	2476.0	19.05%	6401.3	18.47%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.054e+00	0.0841	5884.0	45.28%	15442.8	44.55%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-2.887e+00	0.0988	1022.0	7.87%	2597.9	7.49%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-2.842e+00	0.1026	2176.0	16.75%	5627.0	16.23%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-2.832e+00	0.1029	8417.0	64.78%	22225.0	64.12%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-2.707e+00	0.1159	2101.0	16.17%	5437.9	15.69%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-2.468e+00	0.1462	3118.0	24.00%	8140.0	23.48%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.252e+00	0.1803	10787.0	83.02%	28630.9	82.60%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-2.134e+00	0.2016	1141.0	8.78%	2942.7	8.49%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.128e+00	0.2016	5585.0	42.98%	14721.0	42.47%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.126e+00	0.2016	1952.0	15.02%	5079.5	14.65%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.122e+00	0.2016	9713.0	74.75%	25753.9	74.30%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.084e+00	0.2065	3808.0	29.31%	9998.4	28.84%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.057e+00	0.2108	714.0	5.49%	1826.3	5.27%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.045e+00	0.2122	4897.0	37.69%	12896.7	37.21%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.016e+00	0.2170	7584.0	58.37%	20063.1	57.88%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.685e+00	0.3002	2383.0	18.34%	6251.6	18.03%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.675e+00	0.3016	2197.0	16.91%	5759.1	16.61%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.621e+00	0.3163	2155.0	16.58%	5653.0	16.31%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.569e+00	0.3313	2696.0	20.75%	7091.6	20.46%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.516e+00	0.3470	9758.0	75.10%	25928.0	74.80%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.481e+00	0.3552	767.0	5.90%	1992.1	5.75%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.481e+00	0.3552	767.0	5.90%	1992.1	5.75%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.441e+00	0.3675	3973.0	30.58%	10497.0	30.28%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.419e+00	0.3736	1369.0	10.54%	3586.2	10.35%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.383e+00	0.3849	666.0	5.13%	1731.9	5.00%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.361e+00	0.3914	661.0	5.09%	1719.1	4.96%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.338e+00	0.3982	1111.0	8.55%	2909.8	8.39%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.310e+00	0.4072	3945.0	30.36%	10437.7	30.11%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.309e+00	0.4072	252.0	1.94%	646.6	1.87%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.251e+00	0.4270	1747.0	13.44%	4601.8	13.28%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.224e+00	0.4361	3605.0	27.74%	9542.4	27.53%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.218e+00	0.4362	7056.0	54.30%	18740.3	54.06%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.154e+00	0.4626	1094.0	8.42%	2877.0	8.30%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.142e+00	0.4656	1752.0	13.48%	4624.1	13.34%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.131e+00	0.4682	7977.0	61.39%	21210.3	61.19%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.109e+00	0.4759	2454.0	18.89%	6493.1	18.73%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.078e+00	0.4883	5266.0	40.53%	13986.0	40.35%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.043e+00	0.5027	5496.0	42.30%	14603.4	42.13%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-9.916e-01	0.5266	349.0	2.69%	914.0	2.64%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-9.854e-01	0.5270	1870.0	14.39%	4953.6	14.29%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-9.769e-01	0.5287	5564.0	42.82%	14794.5	42.68%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-9.537e-01	0.5382	494.0	3.80%	1300.2	3.75%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-9.073e-01	0.5608	6768.0	52.09%	18016.9	51.98%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-8.805e-01	0.5730	10325.0	79.46%	27515.1	79.38%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-8.750e-01	0.5732	412.0	3.17%	1087.9	3.14%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-8.490e-01	0.5852	1449.0	11.15%	3847.6	11.10%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-8.463e-01	0.5852	9496.0	73.08%	25306.9	73.01%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-8.426e-01	0.5852	4856.0	37.37%	12927.1	37.29%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-8.370e-01	0.5852	3951.0	30.41%	10515.3	30.34%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-8.146e-01	0.5934	4291.0	33.02%	11425.2	32.96%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-8.091e-01	0.5937	6200.0	47.71%	16517.2	47.65%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-7.985e-01	0.5970	5262.0	40.50%	14017.0	40.44%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-7.910e-01	0.5985	2751.0	21.17%	7323.7	21.13%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-7.891e-01	0.5985	6472.0	49.81%	17246.2	49.75%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-7.676e-01	0.6066	5308.0	40.85%	14145.1	40.81%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-7.364e-01	0.6228	11859.0	91.27%	31629.8	91.25%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-6.675e-01	0.6638	5661.0	43.57%	15105.1	43.58%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-6.347e-01	0.6827	9419.0	72.49%	25135.6	72.51%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-5.321e-01	0.7528	9785.0	75.30%	26130.7	75.38%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-5.192e-01	0.7589	352.0	2.71%	950.0	2.74%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-4.642e-01	0.7979	5693.0	43.81%	15235.7	43.95%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-4.521e-01	0.8038	4441.0	34.18%	11896.5	34.32%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-4.324e-01	0.8158	1676.0	12.90%	4509.4	13.01%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-4.309e-01	0.8158	668.0	5.14%	1807.3	5.21%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.826e-01	0.8494	6332.0	48.73%	16962.1	48.93%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.648e-01	0.8606	2432.0	18.72%	6547.8	18.89%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.481e-01	0.8710	4209.0	32.39%	11304.7	32.61%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.862e-01	0.9223	10021.0	77.12%	26817.9	77.37%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.662e-01	0.9365	378.0	2.91%	1045.4	3.02%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.933e-01	1.0000	11527.0	88.71%	30837.6	88.96%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.881e-01	1.0000	1683.0	12.95%	4586.6	13.23%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.790e-01	1.0000	1865.0	14.35%	5079.9	14.65%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.701e-01	1.0000	3849.0	29.62%	10407.7	30.02%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.605e-01	1.0000	3019.0	23.23%	8187.8	23.62%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.469e-01	1.0000	1552.0	11.94%	4248.0	12.26%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.114e-01	1.0000	1112.0	8.56%	3073.3	8.87%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.058e-01	1.0000	6243.0	48.05%	16847.2	48.60%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-9.402e-02	1.0000	87.0	0.67%	266.3	0.77%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-9.123e-02	1.0000	8264.0	63.60%	22242.4	64.17%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-9.119e-02	1.0000	3754.0	28.89%	10201.2	29.43%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.538e-02	1.0000	314.0	2.42%	910.6	2.63%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-5.990e-02	1.0000	4450.0	34.25%	12097.6	34.90%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-5.714e-02	1.0000	103.0	0.79%	319.9	0.92%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.010e-02	1.0000	1413.0	10.87%	3927.2	11.33%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.342e-02	1.0000	466.0	3.59%	1349.7	3.89%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.965e-02	1.0000	3924.0	30.20%	10732.3	30.96%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.614e-02	1.0000	2848.0	21.92%	7843.8	22.63%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.188e-02	1.0000	2452.0	18.87%	6812.2	19.65%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-7.203e-03	1.0000	6426.0	49.45%	17513.4	50.52%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-7.160e-03	1.0000	6786.0	52.22%	18473.7	53.29%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-7.044e-03	1.0000	832.0	6.40%	2406.9	6.94%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-6.982e-03	1.0000	3509.0	27.00%	9694.3	27.97%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-6.012e-03	1.0000	6184.0	47.59%	16877.5	48.69%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.930e-03	1.0000	4537.0	34.92%	12489.5	36.03%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.269e-03	1.0000	8079.0	62.17%	21967.5	63.37%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.233e-03	1.0000	1341.0	10.32%	3845.1	11.09%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.237e-03	1.0000	4197.0	32.30%	11628.5	33.55%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.093e-03	1.0000	5983.0	46.04%	16424.3	47.38%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-6.100e-04	1.0000	4785.0	36.82%	13240.3	38.20%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.010e-04	1.0000	4019.0	30.93%	11206.2	32.33%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.720e-04	1.0000	7452.0	57.35%	20396.1	58.84%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.920e-04	1.0000	3519.0	27.08%	9871.8	28.48%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.320e-04	1.0000	1919.0	14.77%	5520.7	15.93%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.010e-04	1.0000	2850.0	21.93%	8076.3	23.30%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-9.500e-05	1.0000	770.0	5.93%	2332.7	6.73%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-5.200e-05	1.0000	873.0	6.72%	2635.3	7.60%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-5.000e-06	1.0000	5577.0	42.92%	15541.1	44.83%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-4.000e-06	1.0000	1652.0	12.71%	4874.0	14.06%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-0.000e+00	1.0000	3226.0	24.83%	9270.8	26.74%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-0.000e+00	1.0000	5958.0	45.85%	16672.3	48.10%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-0.000e+00	1.0000	1467.0	11.29%	4466.3	12.88%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-0.000e+00	1.0000	2613.0	20.11%	7706.2	22.23%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-0.000e+00	1.0000	2885.0	22.20%	8492.6	24.50%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-0.000e+00	1.0000	1975.0	15.20%	5989.5	17.28%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-0.000e+00	1.0000	6308.0	48.55%	17829.5	51.44%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-0.000e+00	1.0000	6257.0	48.15%	17856.3	51.51%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-0.000e+00	1.0000	2003.0	15.41%	6249.5	18.03%