#cp  /BLUES/shuhua/Public_html/tamu_epigenetics/bw_files/

for folder in /BLUES/shuhua/bcl2fastq_out/ChromHMM_out/K9me2/*_K9me2
do
#  echo $folder
  tag=${folder##*/}
#  echo $tag
  cmd="cp "$folder"/K9me2_LearnModel/mm10_dense.bigWig  /BLUES/shuhua/Public_html/tamu_epigenetics/bw_files/"$tag"_mm10_dense.bigWig"
  echo $cmd
  eval $cmd
done

for folder in /BLUES/shuhua/bcl2fastq_out/ChromHMM_out/K9me3/*_K9me3
do
#  echo $folder
  tag=${folder##*/}
#  echo $tag
  cmd="cp "$folder"/K9me3_LearnModel/mm10_dense.bigWig  /BLUES/shuhua/Public_html/tamu_epigenetics/bw_files/"$tag"_mm10_dense.bigWig"
  echo $cmd
  eval $cmd
done


cp /BLUES/shuhua/bcl2fastq_out/ChromHMM_out/K9me3/Dnmt_TKO_K9me3_0302/K9me3_LearnModel/mm10_dense.bigWig /BLUES/shuhua/Public_html/tamu_epigenetics/bw_files/Dnmt_TKO_K9me3_0302_mm10_dense.bigWig
cp /BLUES/shuhua/bcl2fastq_out/ChromHMM_out/K9me3/Dnmt_TKO_K9me3_0106/K9me3_LearnModel/mm10_dense.bigWig /BLUES/shuhua/Public_html/tamu_epigenetics/bw_files/Dnmt_TKO_K9me3_0106_mm10_dense.bigWig