ChromHMM Report

Input Directory: K9me2_binarizedData/
Output Directory: K9me2_LearnModel
Number of States: 2
Assembly: mm10
Full ChromHMM command: LearnModel -d 0.01 -z 4 -init random -p 23 K9me2_binarizedData/ K9me2_LearnModel 2 mm10

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • mm10_2_999 Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • mm10_2_999 Browser Custom Track Dense File
  • mm10_2_999 Browser Custom Track Expanded File

    State Enrichments

    mm10_2_999 Enrichments


  • mm10_2_999 Overlap Enrichment SVG File
  • mm10_2_999 Overlap Enrichment Tab-Delimited Text File

  • mm10_2_999_RefSeqTES_neighborhood Enrichment SVG File
  • mm10_2_999_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • mm10_2_999_RefSeqTSS_neighborhood Enrichment SVG File
  • mm10_2_999_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File