******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.4.1 (Release date: Sat Aug 21 19:23:23 2021 -0700) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= out_meme/seqs-centered CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr4:101428016-101428664 1.0000 100 chr11:8523528-8524294 1.0000 100 chr7:75587805-75588379 1.0000 100 chr4:108015147-108015842 1.0000 100 chr7:45704063-45704511 1.0000 100 chr6:48428976-48429311 1.0000 100 chr1:87472279-87473114 1.0000 100 chr10:21685533-21686496 1.0000 100 chr2:154867865-154868387 1.0000 100 chr2:58779402-58779901 1.0000 100 chr7:45704704-45705431 1.0000 100 chr11:6021098-6022007 1.0000 100 chr8:25806139-25806608 1.0000 100 chr6:55170209-55170549 1.0000 100 chr4:128984637-128984946 1.0000 100 chr13:101016034-10101657 1.0000 100 chr1:153065088-153066299 1.0000 100 chr8:110644974-110645690 1.0000 100 chr8:110721030-110721963 1.0000 100 chr5:151393809-151394609 1.0000 100 chr13:36302777-36303189 1.0000 100 chr12:103706148-10370643 1.0000 100 chr13:4264962-4265431 1.0000 100 chr4:109402529-109402929 1.0000 100 chr7:26843375-26844369 1.0000 100 chr12:103645910-10364659 1.0000 100 chr3:95864910-95865523 1.0000 100 chr11:118266155-11826689 1.0000 100 chr15:25688361-25688921 1.0000 100 chr17:25866231-25866490 1.0000 100 chr6:90764049-90764568 1.0000 100 chr7:45710190-45711614 1.0000 100 chr2:58786667-58786940 1.0000 100 chr12:83935145-83935428 1.0000 100 chr16:22960783-22961534 1.0000 100 chr11:98766419-98767614 1.0000 100 chr14:18201104-18201819 1.0000 100 chr19:4036018-4036655 1.0000 100 chr5:8716091-8716492 1.0000 100 chr1:86925817-86926264 1.0000 100 chr14:114074008-11407454 1.0000 100 chr6:91598902-91599520 1.0000 100 chr2:58787456-58787928 1.0000 100 chr8:40922705-40923304 1.0000 100 chr18:20222513-20223291 1.0000 100 chr13:56692062-56692455 1.0000 100 chr10:68507768-68508049 1.0000 100 chr7:45705980-45706165 1.0000 100 chr12:71368631-71369217 1.0000 100 chr3:29981411-29981926 1.0000 100 chr7:28321919-28322459 1.0000 100 chr3:51184580-51185163 1.0000 100 chr2:152359594-152359984 1.0000 100 chr4:150131728-150131978 1.0000 100 chr2:58794050-58794986 1.0000 100 chr8:36290765-36291350 1.0000 100 chr3:115835324-115836019 1.0000 100 chr17:3369616-3370023 1.0000 100 chr7:27251927-27252543 1.0000 100 chr2:58785382-58785724 1.0000 100 chr2:58769961-58770535 1.0000 100 chr15:38908467-38908771 1.0000 100 chr8:93176485-93177115 1.0000 100 chr8:121334790-121335228 1.0000 100 chr2:58773127-58773454 1.0000 100 chr9:55243352-55243626 1.0000 100 chr15:97468716-97469875 1.0000 100 chr11:98768347-98768735 1.0000 100 chr7:91086066-91086426 1.0000 100 chr5:140369420-140369929 1.0000 100 chr7:105787315-105787916 1.0000 100 chr11:4906052-4906667 1.0000 100 chr4:128947339-128947636 1.0000 100 chr7:24927661-24928426 1.0000 100 chr16:15084683-15085069 1.0000 100 chr14:64154335-64154569 1.0000 100 chr5:21288664-21289323 1.0000 100 chr2:58782383-58782948 1.0000 100 chr5:38117025-38117493 1.0000 100 chr6:145855687-145856196 1.0000 100 chr6:125314878-125315143 1.0000 100 chr2:58773627-58774016 1.0000 100 chr4:149393410-149393979 1.0000 100 chr2:129539127-129539536 1.0000 100 chr5:136965819-136966049 1.0000 100 chr7:26838233-26838538 1.0000 100 chr17:78298195-78298464 1.0000 100 chr6:17720045-17720384 1.0000 100 chr17:8278425-8278721 1.0000 100 chr14:31594758-31595145 1.0000 100 chr8:77056598-77057123 1.0000 100 chr2:181461627-181461865 1.0000 100 chr12:5213576-5214118 1.0000 100 chr17:31183641-31184085 1.0000 100 chr18:62140131-62140693 1.0000 100 chr2:146555301-146555760 1.0000 100 chr18:20148909-20149254 1.0000 100 chr6:31572735-31573074 1.0000 100 chr1:87600599-87600874 1.0000 100 chr11:118239755-11824005 1.0000 100 chr12:72954840-72955306 1.0000 100 chr8:93187814-93188198 1.0000 100 chr15:80697524-80698050 1.0000 100 chr5:138741537-138742062 1.0000 100 chr5:130053045-130053240 1.0000 100 chr18:6988558-6988856 1.0000 100 chr13:28507755-28508330 1.0000 100 chr5:20858476-20859069 1.0000 100 chr2:28192798-28193310 1.0000 100 chr18:84389721-84390148 1.0000 100 chr14:17767828-17768360 1.0000 100 chr11:44565006-44565273 1.0000 100 chr4:108781648-108781911 1.0000 100 chr12:79452863-79453286 1.0000 100 chr6:55189462-55189774 1.0000 100 chr8:114793788-114794470 1.0000 100 chr4:131040958-131041690 1.0000 100 chr8:93183522-93183768 1.0000 100 chr15:64046591-64047018 1.0000 100 chr19:26607935-26608153 1.0000 100 chr15:83602683-83603076 1.0000 100 chr7:35746721-35747492 1.0000 100 chr17:27965249-27965709 1.0000 100 chr17:31183276-31183479 1.0000 100 chr10:14045825-14046234 1.0000 100 chr7:119543577-119545300 1.0000 100 chr16:43169302-43169849 1.0000 100 chr8:4839065-4839604 1.0000 100 chr2:129865019-129865296 1.0000 100 chr2:10516478-10516998 1.0000 100 chr8:93191704-93192160 1.0000 100 chr12:83904914-83905229 1.0000 100 chr4:147433253-147433684 1.0000 100 chr6:72259576-72259978 1.0000 100 chr7:112660373-112660668 1.0000 100 chr2:58761055-58761537 1.0000 100 chr6:58610805-58611162 1.0000 100 chr6:8485421-8485938 1.0000 100 chr8:119806696-119807193 1.0000 100 chr2:91515374-91515881 1.0000 100 chr13:4091345-4092103 1.0000 100 chr1:178600849-178601441 1.0000 100 chr10:68868756-68869233 1.0000 100 chr10:99126939-99127336 1.0000 100 chr10:62190056-62190291 1.0000 100 chr3:51846354-51846796 1.0000 100 chr7:71264041-71264594 1.0000 100 chr14:121721527-12172172 1.0000 100 chr15:78780989-78781219 1.0000 100 chr3:145995516-145995831 1.0000 100 chr4:137276910-137277536 1.0000 100 chr4:149586280-149586778 1.0000 100 chr16:23286323-23286940 1.0000 100 chr9:32925948-32926620 1.0000 100 chr7:26838712-26839197 1.0000 100 chr2:73012669-73012997 1.0000 100 chr2:29630802-29631010 1.0000 100 chr9:63099951-63100307 1.0000 100 chr19:4156316-4156603 1.0000 100 chr18:38775510-38775720 1.0000 100 chr10:68256215-68256473 1.0000 100 chr17:86240137-86240374 1.0000 100 chr11:95023400-95023881 1.0000 100 chr13:4076256-4077049 1.0000 100 chr1:191996605-191996981 1.0000 100 chr2:24019060-24019747 1.0000 100 chr13:59892997-59893344 1.0000 100 chr16:24877502-24877749 1.0000 100 chr18:9001952-9002545 1.0000 100 chr6:90726987-90727242 1.0000 100 chr1:21262397-21262813 1.0000 100 chr11:46127616-46128285 1.0000 100 chr11:79065462-79065900 1.0000 100 chr8:68673860-68674325 1.0000 100 chr7:63816054-63816656 1.0000 100 chr7:35745313-35745766 1.0000 100 chr13:35835676-35836020 1.0000 100 chr7:13026485-13026665 1.0000 100 chr8:40921285-40921754 1.0000 100 chr15:82547754-82548302 1.0000 100 chr5:144247994-144248594 1.0000 100 chr18:39020665-39021248 1.0000 100 chr2:58792433-58792685 1.0000 100 chr6:59347752-59348053 1.0000 100 chr11:30263688-30263918 1.0000 100 chr15:31253972-31254432 1.0000 100 chr5:63818405-63818614 1.0000 100 chr10:19443313-19443895 1.0000 100 chr15:31449799-31450021 1.0000 100 chr7:26842997-26843163 1.0000 100 chr5:112002028-112002616 1.0000 100 chr3:131495161-131495362 1.0000 100 chr8:22934489-22934775 1.0000 100 chr13:114301513-11430179 1.0000 100 chr16:38399516-38400208 1.0000 100 chr11:14150446-14150801 1.0000 100 chr5:65324879-65325274 1.0000 100 chr7:101049295-101049629 1.0000 100 chr3:95881264-95881474 1.0000 100 chr8:40918939-40919146 1.0000 100 chr6:142418990-142419355 1.0000 100 chr16:45100895-45101260 1.0000 100 chr6:86610757-86611222 1.0000 100 chr4:136081674-136082185 1.0000 100 chr2:147305254-147305531 1.0000 100 chr3:138454720-138455028 1.0000 100 chr2:58788367-58788773 1.0000 100 chr13:68999036-68999726 1.0000 100 chr1:38626998-38627671 1.0000 100 chr19:31884648-31884944 1.0000 100 chr8:46375850-46376448 1.0000 100 chr1:194977471-194977808 1.0000 100 chr8:126965231-126965614 1.0000 100 chr17:50369130-50369754 1.0000 100 chr1:80247212-80247499 1.0000 100 chr7:99202192-99202466 1.0000 100 chr10:5592036-5592372 1.0000 100 chr2:71670901-71671202 1.0000 100 chr5:38498476-38498819 1.0000 100 chr11:103174926-10317536 1.0000 100 chr11:60197908-60198694 1.0000 100 chr12:103646885-10364730 1.0000 100 chr12:4132965-4133602 1.0000 100 chr1:21267554-21267962 1.0000 100 chr11:95370095-95370415 1.0000 100 chr3:104358768-104359075 1.0000 100 chr18:66243375-66243821 1.0000 100 chr1:21266350-21267106 1.0000 100 chr2:133427050-133427371 1.0000 100 chr4:123239442-123239914 1.0000 100 chr3:138290816-138291302 1.0000 100 chr16:57369775-57370212 1.0000 100 chr7:121003994-121004653 1.0000 100 chr10:40462230-40462572 1.0000 100 chr14:121706479-12170676 1.0000 100 chr8:36291867-36292245 1.0000 100 chr11:58990155-58990392 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chr18:66286725-66287046 1.0000 100 chr11:43836272-43836680 1.0000 100 chr7:125541847-125542269 1.0000 100 chr6:142430406-142430890 1.0000 100 chr6:108486387-108487074 1.0000 100 chr8:93179506-93179735 1.0000 100 chr14:87197579-87197963 1.0000 100 chr5:68735182-68735627 1.0000 100 chr8:93189496-93189746 1.0000 100 chr9:42028767-42029289 1.0000 100 chr6:72954756-72955176 1.0000 100 chr13:51767520-51768617 1.0000 100 chr18:8838194-8838454 1.0000 100 chr16:34605767-34606015 1.0000 100 chr5:64623727-64624085 1.0000 100 chr17:6816137-6816673 1.0000 100 chr4:149657916-149658527 1.0000 100 chr1:86933037-86933511 1.0000 100 chr4:136266721-136267091 1.0000 100 chr6:144815649-144815968 1.0000 100 chr11:116814541-11681490 1.0000 100 chr6:90688780-90689116 1.0000 100 chr3:101575483-101575963 1.0000 100 chr11:63518943-63519314 1.0000 100 chr2:58783176-58783444 1.0000 100 chr7:25636357-25636768 1.0000 100 chr2:102039161-102039742 1.0000 100 chr3:19429878-19430647 1.0000 100 chr9:122826789-122827090 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chr17:48299883-48300769 1.0000 100 chr18:44452695-44453244 1.0000 100 chr12:25265675-25265929 1.0000 100 chr16:4352727-4353519 1.0000 100 chr19:55150240-55150603 1.0000 100 chr10:126502085-12650272 1.0000 100 chr14:24833857-24834133 1.0000 100 chr11:88156081-88156599 1.0000 100 chr3:146797453-146798036 1.0000 100 chr15:75111007-75111517 1.0000 100 chr7:134497135-134497603 1.0000 100 chr6:145863083-145863573 1.0000 100 chr15:80599191-80599829 1.0000 100 chr8:121008662-121008983 1.0000 100 chr2:155903693-155904094 1.0000 100 chr18:12713980-12714285 1.0000 100 chr8:120856840-120857191 1.0000 100 chr11:118253555-11825379 1.0000 100 chr18:75286740-75287396 1.0000 100 chr9:71826095-71826544 1.0000 100 chr11:117091832-11709204 1.0000 100 chr8:93171881-93172457 1.0000 100 chr6:48732660-48733429 1.0000 100 chr8:128424842-128425303 1.0000 100 chr9:53353715-53353924 1.0000 100 chr10:42860117-42860962 1.0000 100 chr11:63545612-63545976 1.0000 100 chr19:53786873-53787163 1.0000 100 chr5:125522970-125523248 1.0000 100 chr9:21969248-21969729 1.0000 100 chr4:63739537-63739828 1.0000 100 chr15:68244770-68245507 1.0000 100 chr5:151408208-151408461 1.0000 100 chr2:61071040-61071354 1.0000 100 chr2:65268717-65269125 1.0000 100 chr14:117324315-11732461 1.0000 100 chr6:146751665-146752046 1.0000 100 chr2:58765269-58765484 1.0000 100 chr12:103644892-10364516 1.0000 100 chr4:141959698-141959965 1.0000 100 chr4:152072384-152072954 1.0000 100 chr19:40013659-40014271 1.0000 100 chr15:3401196-3401690 1.0000 100 chr7:132323325-132323824 1.0000 100 chr9:118595272-118595768 1.0000 100 chr3:54111214-54111726 1.0000 100 chr13:24604636-24605165 1.0000 100 chr17:34144742-34145455 1.0000 100 chr8:35302063-35302349 1.0000 100 chr3:138291533-138292928 1.0000 100 chr15:77037484-77038095 1.0000 100 chr4:152088186-152088369 1.0000 100 chr19:25422129-25422451 1.0000 100 chr11:120665554-12066586 1.0000 100 chr10:86380533-86381035 1.0000 100 chr1:45837708-45838057 1.0000 100 chr5:104102878-104103408 1.0000 100 chr8:40913323-40913486 1.0000 100 chr15:73595181-73595562 1.0000 100 chr5:110217465-110217728 1.0000 100 chr2:58762966-58763331 1.0000 100 chr15:77906635-77906897 1.0000 100 chr1:186855590-186855921 1.0000 100 chr5:104113666-104114139 1.0000 100 chr12:3772951-3773325 1.0000 100 chr11:63767505-63768208 1.0000 100 chr6:91583388-91583809 1.0000 100 chr6:141774448-141774787 1.0000 100 chr5:148972202-148972450 1.0000 100 chr1:21249032-21249678 1.0000 100 chr16:22961804-22962245 1.0000 100 chr1:21256467-21256645 1.0000 100 chr11:8229844-8230229 1.0000 100 chr2:181232146-181232431 1.0000 100 chr2:27895014-27895332 1.0000 100 chr13:24230417-24231553 1.0000 100 chr9:29792109-29792485 1.0000 100 chr4:134903717-134904130 1.0000 100 chr11:3931021-3931192 1.0000 100 chr6:86699574-86699787 1.0000 100 chr11:104599358-10459991 1.0000 100 chr1:90662590-90662888 1.0000 100 chr15:78563903-78564338 1.0000 100 chr7:65809635-65809905 1.0000 100 chr3:121645453-121645753 1.0000 100 chr5:65929147-65929667 1.0000 100 chr11:121250221-12125055 1.0000 100 chr11:25838521-25838849 1.0000 100 chr2:122256118-122256472 1.0000 100 chr16:35189683-35190067 1.0000 100 chr16:94246009-94246408 1.0000 100 chr9:99176095-99176380 1.0000 100 chr4:109019366-109019610 1.0000 100 chr19:43475684-43475959 1.0000 100 chr1:59152071-59152663 1.0000 100 chr8:40910872-40911140 1.0000 100 chr13:59536671-59537004 1.0000 100 chr15:61308936-61309239 1.0000 100 chr13:107925452-10792570 1.0000 100 chr8:40913806-40914033 1.0000 100 chr17:27001216-27001526 1.0000 100 chr15:68244166-68244467 1.0000 100 chr2:5286291-5286746 1.0000 100 chr7:36323900-36324363 1.0000 100 chr1:21263982-21264453 1.0000 100 chr10:4646127-4646409 1.0000 100 chr10:62189382-62189594 1.0000 100 chr1:151121964-151122208 1.0000 100 chr1:87803794-87804082 1.0000 100 chr18:25590661-25591224 1.0000 100 chr9:115489077-115489736 1.0000 100 chr10:63476130-63476649 1.0000 100 chr19:45902372-45902621 1.0000 100 chr10:62221202-62221422 1.0000 100 chr8:40920776-40920963 1.0000 100 chr10:88252163-88252565 1.0000 100 chr1:21263537-21263734 1.0000 100 chr10:87585633-87585902 1.0000 100 chr10:87584837-87585086 1.0000 100 chr19:57118785-57119185 1.0000 100 chr4:103385852-103386703 1.0000 100 chr2:122252829-122253067 1.0000 100 chr1:21247982-21248327 1.0000 100 chr6:145863664-145863889 1.0000 100 chr2:105212915-105213584 1.0000 100 chr1:193189180-193189671 1.0000 100 chr8:40914658-40915055 1.0000 100 chr4:124217235-124217518 1.0000 100 chr2:35646660-35647077 1.0000 100 chr1:182483919-182484260 1.0000 100 chr10:78447351-78447827 1.0000 100 chr3:89140188-89141107 1.0000 100 chr8:94926118-94926447 1.0000 100 chr2:180145656-180146017 1.0000 100 chr5:20320935-20321400 1.0000 100 chr2:11637122-11637555 1.0000 100 chr7:44572139-44572705 1.0000 100 chr14:8063506-8063900 1.0000 100 chr1:119019114-119019409 1.0000 100 chr8:40912708-40913115 1.0000 100 chr2:30625776-30626566 1.0000 100 chr1:75041288-75041738 1.0000 100 chr11:99154920-99155535 1.0000 100 chr3:89147044-89148336 1.0000 100 chr9:58152896-58153309 1.0000 100 chr19:41104429-41104796 1.0000 100 chr5:37044705-37045187 1.0000 100 chr19:40393064-40393278 1.0000 100 chr5:102498799-102499058 1.0000 100 chr12:50648771-50649516 1.0000 100 chr18:13043367-13043679 1.0000 100 chr15:3507320-3507532 1.0000 100 chr3:116356501-116356770 1.0000 100 chr14:61009666-61009931 1.0000 100 chr18:34050261-34050606 1.0000 100 chr13:58962628-58962875 1.0000 100 chr1:194612158-194612349 1.0000 100 chr15:3411745-3412272 1.0000 100 chr1:87534349-87534793 1.0000 100 chr5:112012648-112013165 1.0000 100 chr11:106813504-10681379 1.0000 100 chr2:58762548-58762790 1.0000 100 chr4:151336460-151336752 1.0000 100 chr5:125523428-125524350 1.0000 100 chr10:87937363-87937831 1.0000 100 chr16:10515939-10516525 1.0000 100 chr7:26930160-26931364 1.0000 100 chr13:38503378-38503927 1.0000 100 chr12:71808469-71808961 1.0000 100 chr17:48816530-48816975 1.0000 100 chr4:63221539-63221896 1.0000 100 chr13:96647193-96647583 1.0000 100 chr14:31544702-31545042 1.0000 100 chr6:94935758-94936093 1.0000 100 chr5:29388161-29388556 1.0000 100 chr9:61382875-61383135 1.0000 100 chr8:40920369-40920555 1.0000 100 chr5:121964161-121964356 1.0000 100 chr19:40014641-40015020 1.0000 100 chr15:82582628-82583067 1.0000 100 chr8:40911943-40912178 1.0000 100 chr2:113503480-113503892 1.0000 100 chr5:21267069-21267642 1.0000 100 chr5:125524613-125525090 1.0000 100 chr5:87317226-87318222 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme out_meme/seqs-centered -oc out_meme/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 15 -bfile out_meme/background -dna -revcomp -nostatus -mpi model: mod= zoops nmotifs= 3 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + - width: minw= 6 maxw= 15 nsites: minsites= 2 maxsites= 507 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 50700 N= 507 sample: seed= 0 hsfrac= 0 searchsize= 50700 norand= no csites= 1000 Letter frequencies in dataset: A 0.245 C 0.255 G 0.255 T 0.245 Background letter frequencies (from file out_meme/background): A 0.246 C 0.254 G 0.254 T 0.246 Background model order: 2 ******************************************************************************** ******************************************************************************** MOTIF KGTTACATAA MEME-1 width = 10 sites = 49 llr = 536 E-value = 8.0e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGTTACATAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 11::a:9:aa pos.-specific C :1:::7:::: probability G 48::::1::: matrix T 5:aa:3:a:: bits 2.0 *** ** 1.8 *** *** 1.6 *** *** 1.4 *** *** Relative 1.2 *** **** Entropy 1.0 **** **** (15.8 bits) 0.8 ********* 0.6 ********** 0.4 ********** 0.2 ********** 0.0 ---------- Multilevel TGTTACATAA consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTTACATAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------- chr13:107925452-10792570 - 64 8.65e-07 AGTGGTGTCC TGTTACATAA GAACTACAAA chr16:24877502-24877749 - 54 8.65e-07 GGCACACAGT TGTTACATAA CATATAGATC chr3:145995516-145995831 + 67 8.65e-07 TCTGTTATGC TGTTACATAA GAAGAGCTGT chr12:83904914-83905229 + 49 8.65e-07 acacacaact tgttacataa gtgctgaagg chr12:79452863-79453286 - 39 8.65e-07 TGTGCAGCAC TGTTACATAA GTGGAATAAT chr12:72954840-72955306 - 5 8.65e-07 GGATGTAATC TGTTACATAA CTAT chr5:8716091-8716492 + 25 8.65e-07 AGTTATGAAC TGTTACATAA TTGACCTGCA chr12:83935145-83935428 + 72 8.65e-07 ACTTTCCTGC TGTTACATAA AGTAGAGACA chr13:36302777-36303189 + 82 8.65e-07 AGGCAATAAA TGTTACATAA ACTTTCTAA chr6:48428976-48429311 + 40 8.65e-07 TACATAAACC TGTTACATAA ACCAGTGTCC chr4:134903717-134904130 + 13 1.76e-06 ggctggcctg ggttacataa gaccttgcct chr4:141959698-141959965 + 31 1.76e-06 AAGGGAGATT GGTTACATAA TAACCACTGT chr2:65268717-65269125 - 33 1.76e-06 CACGCTACCA GGTTACATAA TAAGACTTGC chr3:146797453-146798036 - 58 1.76e-06 AGGCCAGTTA GGTTACATAA TAAGATCTGG chr17:86240137-86240374 - 84 1.76e-06 TCAGCTG GGTTACATAA CCTCTGAAGT chr17:8278425-8278721 - 70 1.76e-06 GACCAGTCAG GGTTACATAA TAGATCCTGT chr7:91086066-91086426 - 59 1.76e-06 ACCTTGTGCT GGTTACATAA CCCTTCTCTG chr9:99176095-99176380 + 17 2.60e-06 CTTCTATTGG TGTTATATAA ATCGGGGTAA chr5:148972202-148972450 + 34 2.60e-06 caacctgctt tgttatataa cccggaccca chr18:12524335-12525140 - 69 2.60e-06 TGATCAATGT TGTTATATAA TGTTTGTGCT chr11:62440938-62441249 - 79 2.60e-06 CACAGTTCTT TGTTATATAA ATGTACTATG chr14:64154335-64154569 - 31 2.60e-06 TTCACCTGCC TGTTATATAA TAGCTCTGAG chr2:181461627-181461865 + 44 3.46e-06 TTGCTTTGTT GGTTATATAA CCAGAATGGC chr17:25866231-25866490 + 36 3.46e-06 TAGAGGCCGT GGTTATATAA GACCAGGCTC chr19:31884648-31884944 + 11 4.33e-06 GGGTTCTGGT AGTTACATAA TGCTTATAAA chr18:62140131-62140693 - 15 4.33e-06 GCACAAGGAG AGTTACATAA GCCTGACCTT chr17:3369616-3370023 + 50 4.33e-06 ATTGGAACTA AGTTACATAA TTCTGCTGCA chr4:128984637-128984946 - 87 4.33e-06 CCTT AGTTACATAA GGAGTTGAAA chr5:63818405-63818614 + 55 5.19e-06 TTTATGTCCT TCTTACATAA CTATGTTGAG chr1:87600599-87600874 + 22 5.19e-06 caagttgaag tcttacataa ctgtggtacg chr8:122529236-122529483 - 70 6.09e-06 GCCCTGGACA GCTTACATAA GGGCCAAGAG chr8:22934489-22934775 - 44 6.09e-06 TGACCTAATA GCTTACATAA CACAGTGATG chr8:36290765-36291350 - 1 6.09e-06 GGCTCACGCC GCTTACATAA chr3:51184580-51185163 + 86 6.09e-06 caaggactta gcttacataa ctgtg chr4:108781648-108781911 - 71 6.92e-06 GGTTCAAAAA TATTACATAA CTTGCCAGGG chr1:80247212-80247499 - 36 8.68e-06 TTAAAGTGAA GATTACATAA GCTATTTTGC chr4:151336460-151336752 + 81 1.04e-05 GCTAAACAAT GGTTACGTAA GGACGAGGGA chr19:26607935-26608153 - 50 1.04e-05 ACTCCCCAAA AGTTATATAA ACAAAGGAGG chr12:25265675-25265929 - 7 1.30e-05 ACTTTCCAGG TGTTAAATAA CATTGA chr5:20858476-20859069 + 90 1.30e-05 TAATTGTTTG TGTTAAATAA C chr8:35302063-35302349 - 56 1.64e-05 GTAAAGTGTT TGTTATGTAA GTCTGAGGAA chr1:86933037-86933511 - 76 1.64e-05 AATAAACACA GATTATATAA ATATGGCCAG chr3:115835324-115836019 - 39 1.64e-05 CATGTCTCAG TGTTATGTAA AAATTGTTCC chr2:129865019-129865296 - 47 1.90e-05 CCCAGTGCCA GGTTATGTAA TGTGTTGATG chr1:178600849-178601441 + 38 1.99e-05 gagtctggga ggttacctaa catgtctgtg chr6:59347752-59348053 + 90 2.08e-05 AGCAAACTAT AATTACATAA T chr10:63476130-63476649 + 22 2.96e-05 ATTTCTTCTG TATTACGTAA ACTCGGGCAT chr7:12983263-12983708 - 88 2.96e-05 ATG GGTTATCTAA CTTCTCAGAA chr7:99202192-99202466 + 47 4.43e-05 GGACAGATTC GGTTATACAA CCTTGGTACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTTACATAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:107925452-10792570 8.7e-07 63_[-1]_27 chr16:24877502-24877749 8.7e-07 53_[-1]_37 chr3:145995516-145995831 8.7e-07 66_[+1]_24 chr12:83904914-83905229 8.7e-07 48_[+1]_42 chr12:79452863-79453286 8.7e-07 38_[-1]_52 chr12:72954840-72955306 8.7e-07 4_[-1]_86 chr5:8716091-8716492 8.7e-07 24_[+1]_66 chr12:83935145-83935428 8.7e-07 71_[+1]_19 chr13:36302777-36303189 8.7e-07 81_[+1]_9 chr6:48428976-48429311 8.7e-07 39_[+1]_51 chr4:134903717-134904130 1.8e-06 12_[+1]_78 chr4:141959698-141959965 1.8e-06 30_[+1]_60 chr2:65268717-65269125 1.8e-06 32_[-1]_58 chr3:146797453-146798036 1.8e-06 57_[-1]_33 chr17:86240137-86240374 1.8e-06 83_[-1]_7 chr17:8278425-8278721 1.8e-06 69_[-1]_21 chr7:91086066-91086426 1.8e-06 58_[-1]_32 chr9:99176095-99176380 2.6e-06 16_[+1]_74 chr5:148972202-148972450 2.6e-06 33_[+1]_57 chr18:12524335-12525140 2.6e-06 68_[-1]_22 chr11:62440938-62441249 2.6e-06 78_[-1]_12 chr14:64154335-64154569 2.6e-06 30_[-1]_60 chr2:181461627-181461865 3.5e-06 43_[+1]_47 chr17:25866231-25866490 3.5e-06 35_[+1]_55 chr19:31884648-31884944 4.3e-06 10_[+1]_80 chr18:62140131-62140693 4.3e-06 14_[-1]_76 chr17:3369616-3370023 4.3e-06 49_[+1]_41 chr4:128984637-128984946 4.3e-06 86_[-1]_4 chr5:63818405-63818614 5.2e-06 54_[+1]_36 chr1:87600599-87600874 5.2e-06 21_[+1]_69 chr8:122529236-122529483 6.1e-06 69_[-1]_21 chr8:22934489-22934775 6.1e-06 43_[-1]_47 chr8:36290765-36291350 6.1e-06 [-1]_90 chr3:51184580-51185163 6.1e-06 85_[+1]_5 chr4:108781648-108781911 6.9e-06 70_[-1]_20 chr1:80247212-80247499 8.7e-06 35_[-1]_55 chr4:151336460-151336752 1e-05 80_[+1]_10 chr19:26607935-26608153 1e-05 49_[-1]_41 chr12:25265675-25265929 1.3e-05 6_[-1]_84 chr5:20858476-20859069 1.3e-05 89_[+1]_1 chr8:35302063-35302349 1.6e-05 55_[-1]_35 chr1:86933037-86933511 1.6e-05 75_[-1]_15 chr3:115835324-115836019 1.6e-05 38_[-1]_52 chr2:129865019-129865296 1.9e-05 46_[-1]_44 chr1:178600849-178601441 2e-05 37_[+1]_53 chr6:59347752-59348053 2.1e-05 89_[+1]_1 chr10:63476130-63476649 3e-05 21_[+1]_69 chr7:12983263-12983708 3e-05 87_[-1]_3 chr7:99202192-99202466 4.4e-05 46_[+1]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTTACATAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGTTACATAA width=10 seqs=49 chr13:107925452-10792570 ( 64) TGTTACATAA 1 chr16:24877502-24877749 ( 54) TGTTACATAA 1 chr3:145995516-145995831 ( 67) TGTTACATAA 1 chr12:83904914-83905229 ( 49) TGTTACATAA 1 chr12:79452863-79453286 ( 39) TGTTACATAA 1 chr12:72954840-72955306 ( 5) TGTTACATAA 1 chr5:8716091-8716492 ( 25) TGTTACATAA 1 chr12:83935145-83935428 ( 72) TGTTACATAA 1 chr13:36302777-36303189 ( 82) TGTTACATAA 1 chr6:48428976-48429311 ( 40) TGTTACATAA 1 chr4:134903717-134904130 ( 13) GGTTACATAA 1 chr4:141959698-141959965 ( 31) GGTTACATAA 1 chr2:65268717-65269125 ( 33) GGTTACATAA 1 chr3:146797453-146798036 ( 58) GGTTACATAA 1 chr17:86240137-86240374 ( 84) GGTTACATAA 1 chr17:8278425-8278721 ( 70) GGTTACATAA 1 chr7:91086066-91086426 ( 59) GGTTACATAA 1 chr9:99176095-99176380 ( 17) TGTTATATAA 1 chr5:148972202-148972450 ( 34) TGTTATATAA 1 chr18:12524335-12525140 ( 69) TGTTATATAA 1 chr11:62440938-62441249 ( 79) TGTTATATAA 1 chr14:64154335-64154569 ( 31) TGTTATATAA 1 chr2:181461627-181461865 ( 44) GGTTATATAA 1 chr17:25866231-25866490 ( 36) GGTTATATAA 1 chr19:31884648-31884944 ( 11) AGTTACATAA 1 chr18:62140131-62140693 ( 15) AGTTACATAA 1 chr17:3369616-3370023 ( 50) AGTTACATAA 1 chr4:128984637-128984946 ( 87) AGTTACATAA 1 chr5:63818405-63818614 ( 55) TCTTACATAA 1 chr1:87600599-87600874 ( 22) TCTTACATAA 1 chr8:122529236-122529483 ( 70) GCTTACATAA 1 chr8:22934489-22934775 ( 44) GCTTACATAA 1 chr8:36290765-36291350 ( 1) GCTTACATAA 1 chr3:51184580-51185163 ( 86) GCTTACATAA 1 chr4:108781648-108781911 ( 71) TATTACATAA 1 chr1:80247212-80247499 ( 36) GATTACATAA 1 chr4:151336460-151336752 ( 81) GGTTACGTAA 1 chr19:26607935-26608153 ( 50) AGTTATATAA 1 chr12:25265675-25265929 ( 7) TGTTAAATAA 1 chr5:20858476-20859069 ( 90) TGTTAAATAA 1 chr8:35302063-35302349 ( 56) TGTTATGTAA 1 chr1:86933037-86933511 ( 76) GATTATATAA 1 chr3:115835324-115836019 ( 39) TGTTATGTAA 1 chr2:129865019-129865296 ( 47) GGTTATGTAA 1 chr1:178600849-178601441 ( 38) GGTTACCTAA 1 chr6:59347752-59348053 ( 90) AATTACATAA 1 chr10:63476130-63476649 ( 22) TATTACGTAA 1 chr7:12983263-12983708 ( 88) GGTTATCTAA 1 chr7:99202192-99202466 ( 47) GGTTATACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTTACATAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 46137 bayes= 11.4752 E= 8.0e-030 -101 -1226 68 93 -127 -105 161 -1226 -1226 -1226 -1226 202 -1226 -1226 -1226 202 202 -1226 -1226 -1226 -259 141 -1226 22 180 -264 -132 -1226 -1226 -363 -1226 199 202 -1226 -1226 -1226 202 -1226 -1226 -1226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTTACATAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 49 E= 8.0e-030 0.122449 0.000000 0.408163 0.469388 0.102041 0.122449 0.775510 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.040816 0.673469 0.000000 0.285714 0.857143 0.040816 0.102041 0.000000 0.000000 0.020408 0.000000 0.979592 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTTACATAA MEME-1 regular expression -------------------------------------------------------------------------------- [TG]GTTA[CT]ATAA -------------------------------------------------------------------------------- Time 12.43 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACACACACAC MEME-2 width = 15 sites = 19 llr = 269 E-value = 7.8e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACACACACAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :7:9:a:617:6:9: pos.-specific C 837:a:9293a27:8 probability G 2:3:::1:::::::2 matrix T 11:1:::2:::331: bits 2.0 ** * 1.8 ** * 1.6 **** * * * 1.4 **** * * ** Relative 1.2 ***** * * *** Entropy 1.0 * ***** *** *** (20.4 bits) 0.8 ******* *** *** 0.6 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel CACACACACACACAC consensus CG C C TT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACACAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr8:40920369-40920555 - 23 9.45e-10 CACACACACA CACACACACACACAC TCCAGATCTA chr10:87584837-87585086 + 64 9.45e-10 cgcgcgcacg cacacacacacacac acacacacac chr12:69475065-69475757 + 1 9.45e-10 . cacacacacacacac acacacacac chr7:26838233-26838538 + 1 9.45e-10 . cacacacacacacac acacacatat chr2:10516478-10516998 + 37 6.64e-09 TATGCATGTG CAGacacacacacac atgcaacaca chr5:125523428-125524350 - 1 1.05e-08 AGCCATCTCG GACACACACACACAC chr10:42860117-42860962 + 2 1.15e-08 a cacacacacacacaG AGTCCTCGCT chr1:21263537-21263734 + 16 1.01e-07 ccacagctag cacacacacccctac agtattcctt chr11:63518943-63519314 + 36 1.55e-07 CAGCCTGGGG CTCACACTCACACAC TAACAATGGT chr6:86610757-86611222 + 68 2.42e-07 TTCTAAGTCC CACTCACCCACTCAC CCTCAGTCTG chr5:64623727-64624085 + 33 2.62e-07 CCCTCCCCCG CACACACTCCCCTAC ACCTGCTGTG chr13:96647193-96647583 + 2 3.58e-07 a cccacacacACTtag cagatgtgca chr14:64154335-64154569 - 66 5.29e-07 ACCTCTGCTC CAGACAGCCACACAC TAAAATGTTA chr17:48816530-48816975 + 32 8.81e-07 AGGCCCACGT GACTCACCCCCACAC CGAATTTCCT chr2:58765269-58765484 - 29 1.06e-06 TGGAAACCCT CCCACACTCACTTTC TCTCTAGTGC chr17:86240137-86240374 + 45 1.06e-06 ctgGGGAAGC GAGACACACCCTCAG GGAAAAGTTA chr7:45705980-45706165 - 6 1.30e-06 GTGTGAGCAT CCGACACACCCCCTC CCTTC chr4:136081674-136082185 + 10 1.55e-06 GGCGGTTCC TCGACACCCACTCAC CTGCCACCAG chr14:18201104-18201819 - 28 1.65e-06 CTCTCTTGTG CCCACACTACCATAC AGCTAATGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACACAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:40920369-40920555 9.4e-10 22_[-2]_63 chr10:87584837-87585086 9.4e-10 63_[+2]_22 chr12:69475065-69475757 9.4e-10 [+2]_85 chr7:26838233-26838538 9.4e-10 [+2]_85 chr2:10516478-10516998 6.6e-09 36_[+2]_49 chr5:125523428-125524350 1.1e-08 [-2]_85 chr10:42860117-42860962 1.1e-08 1_[+2]_84 chr1:21263537-21263734 1e-07 15_[+2]_70 chr11:63518943-63519314 1.6e-07 35_[+2]_50 chr6:86610757-86611222 2.4e-07 67_[+2]_18 chr5:64623727-64624085 2.6e-07 32_[+2]_53 chr13:96647193-96647583 3.6e-07 1_[+2]_84 chr14:64154335-64154569 5.3e-07 65_[-2]_20 chr17:48816530-48816975 8.8e-07 31_[+2]_54 chr2:58765269-58765484 1.1e-06 28_[-2]_57 chr17:86240137-86240374 1.1e-06 44_[+2]_41 chr7:45705980-45706165 1.3e-06 5_[-2]_80 chr4:136081674-136082185 1.5e-06 9_[+2]_76 chr14:18201104-18201819 1.7e-06 27_[-2]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACACAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACACACACAC width=15 seqs=19 chr8:40920369-40920555 ( 23) CACACACACACACAC 1 chr10:87584837-87585086 ( 64) CACACACACACACAC 1 chr12:69475065-69475757 ( 1) CACACACACACACAC 1 chr7:26838233-26838538 ( 1) CACACACACACACAC 1 chr2:10516478-10516998 ( 37) CAGACACACACACAC 1 chr5:125523428-125524350 ( 1) GACACACACACACAC 1 chr10:42860117-42860962 ( 2) CACACACACACACAG 1 chr1:21263537-21263734 ( 16) CACACACACCCCTAC 1 chr11:63518943-63519314 ( 36) CTCACACTCACACAC 1 chr6:86610757-86611222 ( 68) CACTCACCCACTCAC 1 chr5:64623727-64624085 ( 33) CACACACTCCCCTAC 1 chr13:96647193-96647583 ( 2) CCCACACACACTTAG 1 chr14:64154335-64154569 ( 66) CAGACAGCCACACAC 1 chr17:48816530-48816975 ( 32) GACTCACCCCCACAC 1 chr2:58765269-58765484 ( 29) CCCACACTCACTTTC 1 chr17:86240137-86240374 ( 45) GAGACACACCCTCAG 1 chr7:45705980-45706165 ( 6) CCGACACACCCCCTC 1 chr4:136081674-136082185 ( 10) TCGACACCCACTCAC 1 chr14:18201104-18201819 ( 28) CCCACACTACCATAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACACAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 43602 bayes= 12.0613 E= 7.8e-010 -1089 164 -69 -222 148 5 -1089 -222 -1089 154 5 -1089 186 -1089 -1089 -122 -1089 198 -1089 -1089 202 -1089 -1089 -1089 -1089 190 -227 -1089 123 -27 -1089 -22 -222 190 -1089 -1089 148 31 -1089 -1089 -1089 198 -1089 -1089 123 -69 -1089 10 -1089 154 -1089 10 186 -1089 -1089 -122 -1089 173 -69 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACACAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 19 E= 7.8e-010 0.000000 0.789474 0.157895 0.052632 0.684211 0.263158 0.000000 0.052632 0.000000 0.736842 0.263158 0.000000 0.894737 0.000000 0.000000 0.105263 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.947368 0.052632 0.000000 0.578947 0.210526 0.000000 0.210526 0.052632 0.947368 0.000000 0.000000 0.684211 0.315789 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.578947 0.157895 0.000000 0.263158 0.000000 0.736842 0.000000 0.263158 0.894737 0.000000 0.000000 0.105263 0.000000 0.842105 0.157895 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACACAC MEME-2 regular expression -------------------------------------------------------------------------------- C[AC][CG]ACAC[ACT]C[AC]C[AT][CT]AC -------------------------------------------------------------------------------- Time 21.69 secs. ******************************************************************************** ******************************************************************************** MOTIF KTTTTGTTTTTTTTW MEME-3 width = 15 sites = 24 llr = 295 E-value = 2.8e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTTTTGTTTTTTTTW MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::2:2:::::2:15 pos.-specific C 2:1:::3:::::::: probability G 313:35::3:3:3:: matrix T 5968737a7a88895 bits 2.0 1.8 * * 1.6 * * * 1.4 * * * * * Relative 1.2 * ** ******** Entropy 1.0 * ** ********* (17.7 bits) 0.8 * ** ********* 0.6 ************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel TTTTTGTTTTTTTTA consensus G G GTC G GAG T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTTGTTTTTTTTW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr11:76120647-76121386 + 7 4.53e-09 GTTCtt tttttttttttttta aaaagaaaaa chr3:146797453-146798036 + 27 2.79e-08 TTTCTTTCTG GTTTTGCtttttttt ttgagcccag chr2:154867865-154868387 + 8 4.02e-08 TTTGTTT GTTTTGTTTTGTTTT TTTAagctgc chr10:19443313-19443895 + 80 6.04e-08 AAGTTTAACT TTGTTATTTTTTTTA TTTCGC chr10:68868756-68869233 + 75 6.04e-08 TTTCCTGCTT CTTTTTTTTTTTTTA AGCCTGCAGG chr4:131040958-131041690 - 61 1.82e-07 TGGGCACTGG GTTTGGTTTTGTTTA CTGTTCTTGC chr18:75286740-75287396 + 65 2.31e-07 TTTATAAAAT TTGTTATTGTTTTTA GAtttatttt chr11:104599358-10459991 - 34 4.09e-07 GGTTCATACT GTTTTTTTTTTTTAA TGGCATAATT chr16:4352727-4353519 - 41 4.09e-07 GATCATAACG TTGTTGTTGTTATTT TGAGACAGGG chr6:17720045-17720384 - 69 4.09e-07 GAGTTTAAAT TTTATTTTGTTTTTA TTTGCTGTTG chr10:40451696-40452114 + 2 7.00e-07 T TTCTGGTTTTGTTTT CTCTCAGTCA chr14:121706479-12170676 - 28 8.49e-07 ACCCTTTTCC CTTTGACTTTTTTTT TCTGGGAGGA chr4:150131728-150131978 - 52 8.49e-07 CCCCGCCCTC TTGTTACTTTTTGTT TTGCTTTGAG chr2:5286291-5286746 + 68 9.36e-07 AAAAGCCCTG TTTTTTCTGTTATTT AAAACCAGAG chr9:44094062-44094454 - 10 1.14e-06 CCACAGACCG CTCTTGTTTTTATTA CACACAGGA chr4:128984637-128984946 + 37 1.14e-06 GCTTTTGGTG Gttttgttttgagtt agaatctcat chr13:51767520-51768617 - 15 1.21e-06 GATTTTCCTA GTTTGTTTGTTTGTT TGAAGTAGAA chr2:155903693-155904094 - 72 2.38e-06 GAGGTTTACT CTGTGGCTTTTTGTT CTGACTTGCA chr13:19246636-19247068 - 30 3.04e-06 TTTTCATAAA TTGTTGTGTTTTGTT GGTGCTAGAA chr10:87937363-87937831 + 67 3.99e-06 GTCCGAACCT ATTTTGCTTTGTGTA AGCCTACCTT chr15:62169373-62170149 + 37 7.04e-06 TCTAGTGTGG GGTAGGTTGTTTTTA TCTCCACAAG chr14:17767828-17768360 + 30 7.04e-06 GAAGTTTAGT TTTAGGCTTTGTTAA GACCAAAGTC chr2:30601513-30601870 - 70 9.88e-06 AGATAAAAAG TGCTTGTTGTTTTAA GGGGGGGGGG chr16:23286323-23286940 - 16 9.88e-06 AGGCAGCACG TTTATATTTATATTT CAAAGCCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTTGTTTTTTTTW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:76120647-76121386 4.5e-09 6_[+3]_79 chr3:146797453-146798036 2.8e-08 26_[+3]_59 chr2:154867865-154868387 4e-08 7_[+3]_78 chr10:19443313-19443895 6e-08 79_[+3]_6 chr10:68868756-68869233 6e-08 74_[+3]_11 chr4:131040958-131041690 1.8e-07 60_[-3]_25 chr18:75286740-75287396 2.3e-07 64_[+3]_21 chr11:104599358-10459991 4.1e-07 33_[-3]_52 chr16:4352727-4353519 4.1e-07 40_[-3]_45 chr6:17720045-17720384 4.1e-07 68_[-3]_17 chr10:40451696-40452114 7e-07 1_[+3]_84 chr14:121706479-12170676 8.5e-07 27_[-3]_58 chr4:150131728-150131978 8.5e-07 51_[-3]_34 chr2:5286291-5286746 9.4e-07 67_[+3]_18 chr9:44094062-44094454 1.1e-06 9_[-3]_76 chr4:128984637-128984946 1.1e-06 36_[+3]_49 chr13:51767520-51768617 1.2e-06 14_[-3]_71 chr2:155903693-155904094 2.4e-06 71_[-3]_14 chr13:19246636-19247068 3e-06 29_[-3]_56 chr10:87937363-87937831 4e-06 66_[+3]_19 chr15:62169373-62170149 7e-06 36_[+3]_49 chr14:17767828-17768360 7e-06 29_[+3]_56 chr2:30601513-30601870 9.9e-06 69_[-3]_16 chr16:23286323-23286940 9.9e-06 15_[-3]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTTGTTTTTTTTW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTTTTGTTTTTTTTW width=15 seqs=24 chr11:76120647-76121386 ( 7) TTTTTTTTTTTTTTA 1 chr3:146797453-146798036 ( 27) GTTTTGCTTTTTTTT 1 chr2:154867865-154868387 ( 8) GTTTTGTTTTGTTTT 1 chr10:19443313-19443895 ( 80) TTGTTATTTTTTTTA 1 chr10:68868756-68869233 ( 75) CTTTTTTTTTTTTTA 1 chr4:131040958-131041690 ( 61) GTTTGGTTTTGTTTA 1 chr18:75286740-75287396 ( 65) TTGTTATTGTTTTTA 1 chr11:104599358-10459991 ( 34) GTTTTTTTTTTTTAA 1 chr16:4352727-4353519 ( 41) TTGTTGTTGTTATTT 1 chr6:17720045-17720384 ( 69) TTTATTTTGTTTTTA 1 chr10:40451696-40452114 ( 2) TTCTGGTTTTGTTTT 1 chr14:121706479-12170676 ( 28) CTTTGACTTTTTTTT 1 chr4:150131728-150131978 ( 52) TTGTTACTTTTTGTT 1 chr2:5286291-5286746 ( 68) TTTTTTCTGTTATTT 1 chr9:44094062-44094454 ( 10) CTCTTGTTTTTATTA 1 chr4:128984637-128984946 ( 37) GTTTTGTTTTGAGTT 1 chr13:51767520-51768617 ( 15) GTTTGTTTGTTTGTT 1 chr2:155903693-155904094 ( 72) CTGTGGCTTTTTGTT 1 chr13:19246636-19247068 ( 30) TTGTTGTGTTTTGTT 1 chr10:87937363-87937831 ( 67) ATTTTGCTTTGTGTA 1 chr15:62169373-62170149 ( 37) GGTAGGTTGTTTTTA 1 chr14:17767828-17768360 ( 30) TTTAGGCTTTGTTAA 1 chr2:30601513-30601870 ( 70) TGCTTGTTGTTTTAA 1 chr16:23286323-23286940 ( 16) TTTATATTTATATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTTGTTTTTTTTW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 43602 bayes= 12.7338 E= 2.8e-003 -256 -61 20 102 -1123 -1123 -161 190 -1123 -102 -2 134 -56 -1123 -1123 176 -1123 -1123 20 153 -24 -1123 109 2 -1123 20 -1123 153 -1123 -1123 -260 196 -1123 -1123 20 153 -256 -1123 -1123 196 -1123 -1123 -2 161 -24 -1123 -1123 169 -1123 -1123 -2 161 -98 -1123 -1123 183 102 -1123 -1123 102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTTGTTTTTTTTW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 24 E= 2.8e-003 0.041667 0.166667 0.291667 0.500000 0.000000 0.000000 0.083333 0.916667 0.000000 0.125000 0.250000 0.625000 0.166667 0.000000 0.000000 0.833333 0.000000 0.000000 0.291667 0.708333 0.208333 0.000000 0.541667 0.250000 0.000000 0.291667 0.000000 0.708333 0.000000 0.000000 0.041667 0.958333 0.000000 0.000000 0.291667 0.708333 0.041667 0.000000 0.000000 0.958333 0.000000 0.000000 0.250000 0.750000 0.208333 0.000000 0.000000 0.791667 0.000000 0.000000 0.250000 0.750000 0.125000 0.000000 0.000000 0.875000 0.500000 0.000000 0.000000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTTGTTTTTTTTW MEME-3 regular expression -------------------------------------------------------------------------------- [TG]T[TG]T[TG][GTA][TC]T[TG]T[TG][TA][TG]T[AT] -------------------------------------------------------------------------------- Time 31.00 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:101428016-101428664 1.69e-01 100 chr11:8523528-8524294 4.31e-02 43_[-3(3.50e-05)]_42 chr7:75587805-75588379 4.81e-03 26_[+3(9.39e-05)]_12_[-2(3.81e-05)]_\ 1_[-2(3.81e-05)]_16 chr4:108015147-108015842 5.25e-01 100 chr7:45704063-45704511 7.87e-01 100 chr6:48428976-48429311 3.26e-03 15_[-1(1.64e-05)]_1_[+1(6.92e-06)]_\ 3_[+1(8.65e-07)]_51 chr1:87472279-87473114 9.64e-01 100 chr10:21685533-21686496 3.49e-02 100 chr2:154867865-154868387 8.88e-05 7_[+3(4.02e-08)]_78 chr2:58779402-58779901 2.09e-01 100 chr7:45704704-45705431 8.92e-01 100 chr11:6021098-6022007 1.06e-01 75_[-2(4.11e-05)]_10 chr8:25806139-25806608 3.96e-01 100 chr6:55170209-55170549 9.87e-01 100 chr4:128984637-128984946 1.46e-05 36_[+3(1.14e-06)]_35_[-1(4.33e-06)]_\ 4 chr13:101016034-10101657 2.79e-01 100 chr1:153065088-153066299 9.22e-01 100 chr8:110644974-110645690 6.04e-01 100 chr8:110721030-110721963 6.98e-01 100 chr5:151393809-151394609 9.86e-01 100 chr13:36302777-36303189 1.75e-03 81_[+1(8.65e-07)]_9 chr12:103706148-10370643 1.88e-01 100 chr13:4264962-4265431 1.55e-01 3_[+3(9.71e-05)]_82 chr4:109402529-109402929 4.30e-01 100 chr7:26843375-26844369 2.52e-01 100 chr12:103645910-10364659 6.11e-02 100 chr3:95864910-95865523 8.83e-01 100 chr11:118266155-11826689 8.28e-01 100 chr15:25688361-25688921 2.19e-01 100 chr17:25866231-25866490 1.22e-02 35_[+1(3.46e-06)]_55 chr6:90764049-90764568 3.56e-01 100 chr7:45710190-45711614 1.00e+00 100 chr2:58786667-58786940 7.20e-01 100 chr12:83935145-83935428 3.21e-03 71_[+1(8.65e-07)]_19 chr16:22960783-22961534 6.73e-01 100 chr11:98766419-98767614 7.91e-01 100 chr14:18201104-18201819 1.00e-02 27_[-2(1.65e-06)]_58 chr19:4036018-4036655 8.05e-01 100 chr5:8716091-8716492 6.73e-04 24_[+1(8.65e-07)]_66 chr1:86925817-86926264 6.81e-01 100 chr14:114074008-11407454 4.48e-01 100 chr6:91598902-91599520 1.00e+00 100 chr2:58787456-58787928 3.64e-01 100 chr8:40922705-40923304 6.40e-01 100 chr18:20222513-20223291 8.12e-02 100 chr13:56692062-56692455 3.28e-01 100 chr10:68507768-68508049 8.71e-01 100 chr7:45705980-45706165 8.33e-03 5_[-2(1.30e-06)]_80 chr12:71368631-71369217 7.70e-01 100 chr3:29981411-29981926 8.12e-01 100 chr7:28321919-28322459 8.38e-01 100 chr3:51184580-51185163 2.86e-03 85_[+1(6.09e-06)]_5 chr2:152359594-152359984 9.96e-01 100 chr4:150131728-150131978 3.98e-03 51_[-3(8.49e-07)]_34 chr2:58794050-58794986 6.57e-01 100 chr8:36290765-36291350 1.40e-02 [-1(6.09e-06)]_90 chr3:115835324-115836019 2.61e-02 38_[-1(1.64e-05)]_52 chr17:3369616-3370023 6.07e-03 49_[+1(4.33e-06)]_41 chr7:27251927-27252543 2.70e-01 100 chr2:58785382-58785724 8.67e-01 100 chr2:58769961-58770535 1.40e-01 14_[-3(9.98e-05)]_71 chr15:38908467-38908771 2.55e-01 100 chr8:93176485-93177115 3.31e-01 100 chr8:121334790-121335228 5.25e-01 100 chr2:58773127-58773454 2.89e-01 100 chr9:55243352-55243626 8.27e-01 100 chr15:97468716-97469875 2.79e-01 100 chr11:98768347-98768735 9.69e-01 100 chr7:91086066-91086426 4.21e-04 58_[-1(1.76e-06)]_32 chr5:140369420-140369929 2.38e-01 100 chr7:105787315-105787916 6.99e-01 100 chr11:4906052-4906667 5.57e-01 100 chr4:128947339-128947636 6.97e-02 10_[+2(5.06e-05)]_75 chr7:24927661-24928426 9.05e-01 100 chr16:15084683-15085069 8.49e-01 100 chr14:64154335-64154569 2.40e-06 30_[-1(2.60e-06)]_25_[-2(5.29e-07)]_\ 20 chr5:21288664-21289323 8.37e-01 100 chr2:58782383-58782948 5.34e-01 100 chr5:38117025-38117493 3.26e-01 100 chr6:145855687-145856196 1.02e-01 59_[-2(6.47e-05)]_26 chr6:125314878-125315143 1.15e-01 100 chr2:58773627-58774016 9.34e-02 100 chr4:149393410-149393979 3.52e-01 100 chr2:129539127-129539536 6.05e-02 100 chr5:136965819-136966049 9.88e-01 100 chr7:26838233-26838538 4.10e-06 [+2(9.45e-10)]_85 chr17:78298195-78298464 6.05e-02 100 chr6:17720045-17720384 2.24e-03 68_[-3(4.09e-07)]_17 chr17:8278425-8278721 8.48e-03 69_[-1(1.76e-06)]_21 chr14:31594758-31595145 3.48e-01 100 chr8:77056598-77057123 7.34e-01 100 chr2:181461627-181461865 6.53e-06 43_[+1(3.46e-06)]_24_[+2(5.25e-05)]_\ 8 chr12:5213576-5214118 4.00e-01 100 chr17:31183641-31184085 8.84e-01 100 chr18:62140131-62140693 1.67e-03 14_[-1(4.33e-06)]_76 chr2:146555301-146555760 3.54e-01 100 chr18:20148909-20149254 9.16e-01 100 chr6:31572735-31573074 1.87e-01 100 chr1:87600599-87600874 8.90e-03 21_[+1(5.19e-06)]_69 chr11:118239755-11824005 3.14e-01 100 chr12:72954840-72955306 1.07e-03 4_[-1(8.65e-07)]_86 chr8:93187814-93188198 8.11e-01 100 chr15:80697524-80698050 6.06e-01 100 chr5:138741537-138742062 1.21e-01 100 chr5:130053045-130053240 5.90e-01 100 chr18:6988558-6988856 6.90e-01 100 chr13:28507755-28508330 1.13e-01 100 chr5:20858476-20859069 3.18e-03 89_[+1(1.30e-05)]_1 chr2:28192798-28193310 7.64e-01 100 chr18:84389721-84390148 9.59e-01 100 chr14:17767828-17768360 4.76e-03 29_[+3(7.04e-06)]_56 chr11:44565006-44565273 1.06e-01 100 chr4:108781648-108781911 8.07e-03 70_[-1(6.92e-06)]_20 chr12:79452863-79453286 2.57e-03 38_[-1(8.65e-07)]_52 chr6:55189462-55189774 4.49e-01 100 chr8:114793788-114794470 2.66e-02 100 chr4:131040958-131041690 6.52e-04 60_[-3(1.82e-07)]_25 chr8:93183522-93183768 4.28e-01 100 chr15:64046591-64047018 1.84e-01 100 chr19:26607935-26608153 1.71e-03 49_[-1(1.04e-05)]_41 chr15:83602683-83603076 5.09e-01 100 chr7:35746721-35747492 9.96e-01 100 chr17:27965249-27965709 9.31e-01 100 chr17:31183276-31183479 2.49e-01 100 chr10:14045825-14046234 4.35e-01 100 chr7:119543577-119545300 2.37e-01 100 chr16:43169302-43169849 2.50e-01 100 chr8:4839065-4839604 7.30e-01 100 chr2:129865019-129865296 9.34e-03 46_[-1(1.90e-05)]_44 chr2:10516478-10516998 4.81e-06 36_[+2(6.64e-09)]_6_[+2(4.97e-06)]_\ 28 chr8:93191704-93192160 7.30e-01 100 chr12:83904914-83905229 2.76e-03 48_[+1(8.65e-07)]_29_[+1(5.22e-05)]_\ 3 chr4:147433253-147433684 6.98e-02 100 chr6:72259576-72259978 8.91e-01 100 chr7:112660373-112660668 7.60e-01 100 chr2:58761055-58761537 2.70e-02 100 chr6:58610805-58611162 6.08e-01 100 chr6:8485421-8485938 2.54e-01 100 chr8:119806696-119807193 8.33e-01 100 chr2:91515374-91515881 4.71e-02 100 chr13:4091345-4092103 5.79e-01 100 chr1:178600849-178601441 3.38e-03 37_[+1(1.99e-05)]_53 chr10:68868756-68869233 1.52e-04 74_[+3(6.04e-08)]_11 chr10:99126939-99127336 6.05e-01 100 chr10:62190056-62190291 7.70e-01 100 chr3:51846354-51846796 9.72e-01 100 chr7:71264041-71264594 5.63e-01 100 chr14:121721527-12172172 2.47e-01 100 chr15:78780989-78781219 3.13e-01 100 chr3:145995516-145995831 2.02e-04 66_[+1(8.65e-07)]_24 chr4:137276910-137277536 9.99e-01 100 chr4:149586280-149586778 1.00e+00 100 chr16:23286323-23286940 2.49e-03 15_[-3(9.88e-06)]_70 chr9:32925948-32926620 2.71e-01 100 chr7:26838712-26839197 7.19e-01 100 chr2:73012669-73012997 7.70e-01 100 chr2:29630802-29631010 4.86e-01 100 chr9:63099951-63100307 3.06e-01 100 chr19:4156316-4156603 9.99e-01 100 chr18:38775510-38775720 1.00e+00 100 chr10:68256215-68256473 4.08e-01 100 chr17:86240137-86240374 4.73e-06 44_[+2(1.06e-06)]_5_[+1(2.96e-05)]_\ 9_[-1(1.76e-06)]_7 chr11:95023400-95023881 1.20e-01 100 chr13:4076256-4077049 1.99e-01 100 chr1:191996605-191996981 5.06e-02 54_[-3(7.86e-05)]_31 chr2:24019060-24019747 3.94e-01 100 chr13:59892997-59893344 2.72e-01 100 chr16:24877502-24877749 2.66e-03 53_[-1(8.65e-07)]_37 chr18:9001952-9002545 1.58e-01 100 chr6:90726987-90727242 1.10e-02 57_[-1(6.27e-05)]_33 chr1:21262397-21262813 5.58e-01 100 chr11:46127616-46128285 8.81e-01 100 chr11:79065462-79065900 8.99e-01 100 chr8:68673860-68674325 8.24e-01 100 chr7:63816054-63816656 3.77e-02 100 chr7:35745313-35745766 2.66e-01 100 chr13:35835676-35836020 2.62e-02 46_[+3(3.50e-05)]_39 chr7:13026485-13026665 3.74e-01 100 chr8:40921285-40921754 2.57e-01 100 chr15:82547754-82548302 7.16e-01 100 chr5:144247994-144248594 2.89e-01 100 chr18:39020665-39021248 5.02e-02 100 chr2:58792433-58792685 4.92e-01 100 chr6:59347752-59348053 9.61e-03 89_[+1(2.08e-05)]_1 chr11:30263688-30263918 2.83e-01 100 chr15:31253972-31254432 9.01e-01 100 chr5:63818405-63818614 1.34e-02 54_[+1(5.19e-06)]_36 chr10:19443313-19443895 3.97e-04 79_[+3(6.04e-08)]_6 chr15:31449799-31450021 5.86e-01 100 chr7:26842997-26843163 8.92e-01 100 chr5:112002028-112002616 6.53e-01 100 chr3:131495161-131495362 8.07e-01 100 chr8:22934489-22934775 2.68e-03 43_[-1(6.09e-06)]_47 chr13:114301513-11430179 6.30e-01 100 chr16:38399516-38400208 5.06e-01 100 chr11:14150446-14150801 2.20e-01 100 chr5:65324879-65325274 8.61e-01 100 chr7:101049295-101049629 6.45e-01 100 chr3:95881264-95881474 3.18e-01 100 chr8:40918939-40919146 8.68e-01 100 chr6:142418990-142419355 1.39e-02 76_[+2(3.39e-05)]_9 chr16:45100895-45101260 9.13e-01 100 chr6:86610757-86611222 9.69e-04 67_[+2(2.42e-07)]_18 chr4:136081674-136082185 1.14e-02 9_[+2(1.55e-06)]_76 chr2:147305254-147305531 5.40e-01 100 chr3:138454720-138455028 3.65e-01 100 chr2:58788367-58788773 8.41e-01 100 chr13:68999036-68999726 9.84e-01 100 chr1:38626998-38627671 2.81e-01 100 chr19:31884648-31884944 1.34e-02 10_[+1(4.33e-06)]_80 chr8:46375850-46376448 5.90e-02 100 chr1:194977471-194977808 1.32e-01 81_[+1(7.76e-05)]_9 chr8:126965231-126965614 6.75e-02 100 chr17:50369130-50369754 9.00e-01 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