Invoking:
  getsize out_meme/temp 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.041561
Invoking:
  fasta-most -min 50 < out_meme/temp 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.189541
Invoking:
  fasta-center -dna -len 100 < out_meme/temp 1> out_meme/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.277692
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 2 out_meme/temp out_meme/background
Finished invoke:
  name: bg  status: 0  time: 0.12095
Invoking:
  meme out_meme/seqs-centered -oc out_meme/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 15 -bfile out_meme/background -dna -p 24 -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 32.888035
Invoking:
  streme --verbosity 1 --oc out_meme/streme_out -dna --p out_meme/seqs-centered --minw 6 --maxw 15 --order 2
Finished invoke:
  name: streme  status: 0  time: 6.282964
Invoking:
  centrimo -seqlen 283 -verbosity 1 -oc out_meme/centrimo_out -bfile out_meme/background out_meme/temp out_meme/meme_out/meme.xml out_meme/streme_out/streme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.607997
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 out_meme/combined.meme out_meme/combined.meme 1> out_meme/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.230276
Invoking:
  spamo -verbosity 1 -oc out_meme/spamo_out_1 -bgfile out_meme/background -keepprimary -primary KGTTACATAA out_meme/temp out_meme/meme_out/meme.xml out_meme/meme_out/meme.xml out_meme/streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.79574
Invoking:
  spamo -verbosity 1 -oc out_meme/spamo_out_2 -bgfile out_meme/background -keepprimary -primary CACACACACACACAC out_meme/temp out_meme/meme_out/meme.xml out_meme/meme_out/meme.xml out_meme/streme_out/streme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.529803
Invoking:
  spamo -verbosity 1 -oc out_meme/spamo_out_3 -bgfile out_meme/background -keepprimary -primary KTTTTGTTTTTTTTW out_meme/temp out_meme/meme_out/meme.xml out_meme/meme_out/meme.xml out_meme/streme_out/streme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.557731
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc out_meme/fimo_out_1 --bgfile out_meme/background --motif KGTTACATAA out_meme/meme_out/meme.xml out_meme/temp
Finished invoke:
  name: fimo1  status: 0  time: 1.176093
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc out_meme/fimo_out_2 --bgfile out_meme/background --motif CACACACACACACAC out_meme/meme_out/meme.xml out_meme/temp
Finished invoke:
  name: fimo2  status: 0  time: 0.558103
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc out_meme/fimo_out_3 --bgfile out_meme/background --motif KTTTTGTTTTTTTTW out_meme/meme_out/meme.xml out_meme/temp
Finished invoke:
  name: fimo3  status: 0  time: 0.530732
Writing output
Invoking:
  meme-chip_html_to_tsv out_meme/meme-chip.html out_meme/summary.tsv "meme-chip -o out_meme -meme-p 24 temp" 5.4.1 "Sat Aug 21 19\:23\:23 2021 -0700"
Finished invoke:
  name: summary  status: 0  time: 0.41877
Done