Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 30563)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 30476)	% of Background Sequences with Motif
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-1010	-2.327e+03	0.0000	6302.0	20.62%	2477.7	8.13%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-965	-2.222e+03	0.0000	5447.0	17.82%	2000.2	6.56%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-941	-2.169e+03	0.0000	5714.0	18.69%	2196.9	7.21%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-851	-1.962e+03	0.0000	4215.0	13.79%	1403.9	4.60%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-776	-1.787e+03	0.0000	2617.0	8.56%	636.7	2.09%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-766	-1.765e+03	0.0000	8172.0	26.73%	4210.3	13.81%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-759	-1.748e+03	0.0000	9661.0	31.61%	5384.4	17.66%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-728	-1.677e+03	0.0000	3394.0	11.10%	1074.4	3.52%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-716	-1.650e+03	0.0000	3072.0	10.05%	912.8	2.99%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-705	-1.625e+03	0.0000	3266.0	10.68%	1027.9	3.37%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-704	-1.623e+03	0.0000	3628.0	11.87%	1231.4	4.04%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-698	-1.609e+03	0.0000	3293.0	10.77%	1049.6	3.44%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-686	-1.582e+03	0.0000	2151.0	7.04%	486.3	1.59%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-681	-1.569e+03	0.0000	3552.0	11.62%	1214.4	3.98%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-663	-1.528e+03	0.0000	3585.0	11.73%	1254.6	4.12%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-599	-1.380e+03	0.0000	3807.0	12.45%	1470.5	4.82%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-580	-1.336e+03	0.0000	3986.0	13.04%	1610.6	5.28%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-562	-1.295e+03	0.0000	4460.0	14.59%	1947.3	6.39%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-560	-1.290e+03	0.0000	4321.0	14.14%	1858.6	6.10%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-512	-1.179e+03	0.0000	5476.0	17.91%	2751.9	9.03%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-511	-1.179e+03	0.0000	5751.0	18.81%	2953.9	9.69%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-502	-1.156e+03	0.0000	3146.0	10.29%	1197.5	3.93%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e-497	-1.145e+03	0.0000	8377.0	27.41%	5036.9	16.52%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-497	-1.145e+03	0.0000	1517.0	4.96%	332.0	1.09%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-485	-1.118e+03	0.0000	2936.0	9.61%	1092.6	3.58%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-464	-1.071e+03	0.0000	5730.0	18.75%	3044.1	9.98%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-457	-1.054e+03	0.0000	9274.0	30.34%	5903.9	19.36%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-449	-1.034e+03	0.0000	6789.0	22.21%	3898.5	12.79%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-431	-9.929e+02	0.0000	2163.0	7.08%	710.3	2.33%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-401	-9.234e+02	0.0000	10131.0	33.14%	6837.3	22.43%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-380	-8.759e+02	0.0000	8562.0	28.01%	5562.6	18.25%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-372	-8.568e+02	0.0000	10035.0	32.83%	6863.1	22.51%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-359	-8.282e+02	0.0000	11212.0	36.68%	7959.1	26.11%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-357	-8.235e+02	0.0000	8331.0	27.25%	5447.5	17.87%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-351	-8.087e+02	0.0000	5194.0	16.99%	2923.2	9.59%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-348	-8.035e+02	0.0000	1450.0	4.74%	413.3	1.36%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-336	-7.753e+02	0.0000	8383.0	27.43%	5568.4	18.26%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-323	-7.444e+02	0.0000	6151.0	20.12%	3759.5	12.33%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-316	-7.295e+02	0.0000	3720.0	12.17%	1908.4	6.26%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-297	-6.853e+02	0.0000	1120.0	3.66%	294.6	0.97%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-269	-6.200e+02	0.0000	16243.0	53.14%	13152.4	43.14%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-251	-5.792e+02	0.0000	1164.0	3.81%	358.0	1.17%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-245	-5.644e+02	0.0000	2358.0	7.71%	1103.5	3.62%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-238	-5.488e+02	0.0000	3363.0	11.00%	1837.7	6.03%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-197	-4.544e+02	0.0000	3868.0	12.65%	2345.5	7.69%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-189	-4.373e+02	0.0000	3155.0	10.32%	1814.4	5.95%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-182	-4.213e+02	0.0000	3162.0	10.34%	1840.9	6.04%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-177	-4.083e+02	0.0000	877.0	2.87%	282.1	0.93%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-170	-3.921e+02	0.0000	10103.0	33.05%	7892.9	25.89%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-155	-3.592e+02	0.0000	11382.0	37.24%	9178.7	30.11%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-138	-3.187e+02	0.0000	1744.0	5.71%	905.3	2.97%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-135	-3.121e+02	0.0000	3370.0	11.02%	2166.1	7.10%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-129	-2.981e+02	0.0000	443.0	1.45%	107.8	0.35%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-129	-2.975e+02	0.0000	436.0	1.43%	104.7	0.34%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-128	-2.951e+02	0.0000	11757.0	38.46%	9733.8	31.93%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-116	-2.693e+02	0.0000	1934.0	6.33%	1102.5	3.62%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-108	-2.488e+02	0.0000	2374.0	7.77%	1471.2	4.83%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-97	-2.245e+02	0.0000	343.0	1.12%	86.0	0.28%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-97	-2.238e+02	0.0000	2179.0	7.13%	1356.3	4.45%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-96	-2.223e+02	0.0000	1412.0	4.62%	771.9	2.53%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-92	-2.133e+02	0.0000	1891.0	6.19%	1146.3	3.76%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-92	-2.128e+02	0.0000	370.0	1.21%	102.1	0.33%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-92	-2.119e+02	0.0000	357.0	1.17%	96.6	0.32%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-91	-2.097e+02	0.0000	345.0	1.13%	91.2	0.30%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-85	-1.967e+02	0.0000	1308.0	4.28%	725.4	2.38%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-85	-1.964e+02	0.0000	3435.0	11.24%	2445.3	8.02%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-83	-1.927e+02	0.0000	2893.0	9.46%	1995.9	6.55%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-81	-1.879e+02	0.0000	8461.0	27.68%	7000.1	22.96%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-81	-1.875e+02	0.0000	2861.0	9.36%	1979.2	6.49%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-80	-1.847e+02	0.0000	2660.0	8.70%	1817.7	5.96%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-78	-1.805e+02	0.0000	1184.0	3.87%	653.4	2.14%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-76	-1.769e+02	0.0000	370.0	1.21%	117.0	0.38%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-76	-1.759e+02	0.0000	280.0	0.92%	72.7	0.24%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-75	-1.749e+02	0.0000	1730.0	5.66%	1079.9	3.54%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-75	-1.732e+02	0.0000	500.0	1.64%	193.4	0.63%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-75	-1.732e+02	0.0000	500.0	1.64%	193.4	0.63%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-73	-1.697e+02	0.0000	1257.0	4.11%	721.5	2.37%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-72	-1.667e+02	0.0000	5590.0	18.29%	4429.1	14.53%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-71	-1.642e+02	0.0000	1069.0	3.50%	589.0	1.93%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-70	-1.615e+02	0.0000	4537.0	14.84%	3499.2	11.48%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-67	-1.565e+02	0.0000	2479.0	8.11%	1725.6	5.66%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-66	-1.534e+02	0.0000	451.0	1.48%	176.9	0.58%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-65	-1.516e+02	0.0000	2092.0	6.84%	1413.0	4.63%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-63	-1.472e+02	0.0000	1082.0	3.54%	619.8	2.03%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-62	-1.446e+02	0.0000	4920.0	16.10%	3896.8	12.78%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-60	-1.397e+02	0.0000	1712.0	5.60%	1125.4	3.69%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-59	-1.374e+02	0.0000	1958.0	6.41%	1331.7	4.37%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-56	-1.303e+02	0.0000	1509.0	4.94%	978.4	3.21%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-56	-1.300e+02	0.0000	6881.0	22.51%	5753.7	18.87%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-55	-1.275e+02	0.0000	5252.0	17.18%	4258.3	13.97%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-52	-1.206e+02	0.0000	399.0	1.31%	167.0	0.55%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-52	-1.203e+02	0.0000	1511.0	4.94%	998.7	3.28%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-52	-1.200e+02	0.0000	1052.0	3.44%	634.4	2.08%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-51	-1.179e+02	0.0000	3591.0	11.75%	2791.9	9.16%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-50	-1.166e+02	0.0000	2681.0	8.77%	1994.8	6.54%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-49	-1.150e+02	0.0000	811.0	2.65%	458.3	1.50%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-49	-1.140e+02	0.0000	1276.0	4.17%	821.0	2.69%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-48	-1.122e+02	0.0000	1359.0	4.45%	890.7	2.92%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-48	-1.121e+02	0.0000	1976.0	6.46%	1401.8	4.60%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-48	-1.110e+02	0.0000	704.0	2.30%	384.4	1.26%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-47	-1.084e+02	0.0000	422.0	1.38%	190.1	0.62%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-45	-1.059e+02	0.0000	4384.0	14.34%	3547.2	11.63%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-45	-1.047e+02	0.0000	1645.0	5.38%	1140.4	3.74%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-44	-1.021e+02	0.0000	10042.0	32.85%	8890.2	29.16%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-43	-9.964e+01	0.0000	417.0	1.36%	194.6	0.64%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-41	-9.589e+01	0.0000	1791.0	5.86%	1283.6	4.21%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-40	-9.415e+01	0.0000	4038.0	13.21%	3277.1	10.75%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-39	-9.192e+01	0.0000	1335.0	4.37%	910.2	2.99%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-39	-9.158e+01	0.0000	5337.0	17.46%	4483.7	14.71%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-38	-8.915e+01	0.0000	889.0	2.91%	555.2	1.82%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-37	-8.530e+01	0.0000	3677.0	12.03%	2983.3	9.79%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-35	-8.189e+01	0.0000	288.0	0.94%	124.7	0.41%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-34	-8.039e+01	0.0000	462.0	1.51%	245.0	0.80%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-34	-8.011e+01	0.0000	5517.0	18.05%	4705.4	15.43%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-32	-7.513e+01	0.0000	3761.0	12.30%	3101.1	10.17%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-32	-7.460e+01	0.0000	479.0	1.57%	263.4	0.86%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-31	-7.260e+01	0.0000	2531.0	8.28%	1997.6	6.55%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-30	-6.914e+01	0.0000	2310.0	7.56%	1812.4	5.94%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-29	-6.712e+01	0.0000	1694.0	5.54%	1276.3	4.19%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-28	-6.517e+01	0.0000	2253.0	7.37%	1775.4	5.82%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-28	-6.517e+01	0.0000	729.0	2.38%	469.7	1.54%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-28	-6.478e+01	0.0000	2930.0	9.59%	2386.5	7.83%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-27	-6.297e+01	0.0000	2077.0	6.79%	1626.8	5.34%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-25	-5.844e+01	0.0000	2416.0	7.90%	1946.7	6.39%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-24	-5.714e+01	0.0000	810.0	2.65%	550.4	1.81%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-24	-5.623e+01	0.0000	685.0	2.24%	450.5	1.48%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-23	-5.410e+01	0.0000	3133.0	10.25%	2618.5	8.59%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-23	-5.405e+01	0.0000	848.0	2.77%	588.1	1.93%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-23	-5.392e+01	0.0000	379.0	1.24%	215.6	0.71%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-23	-5.375e+01	0.0000	582.0	1.90%	372.4	1.22%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-23	-5.347e+01	0.0000	1328.0	4.34%	998.9	3.28%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-23	-5.314e+01	0.0000	2003.0	6.55%	1595.8	5.23%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-22	-5.115e+01	0.0000	2147.0	7.02%	1732.8	5.68%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-21	-4.979e+01	0.0000	406.0	1.33%	241.4	0.79%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-21	-4.925e+01	0.0000	260.0	0.85%	134.3	0.44%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-21	-4.868e+01	0.0000	3678.0	12.03%	3150.9	10.34%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-20	-4.819e+01	0.0000	3357.0	10.98%	2854.6	9.36%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-20	-4.680e+01	0.0000	3249.0	10.63%	2761.3	9.06%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-19	-4.392e+01	0.0000	1994.0	6.52%	1623.6	5.33%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-18	-4.177e+01	0.0000	620.0	2.03%	427.0	1.40%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-17	-4.130e+01	0.0000	2196.0	7.18%	1819.0	5.97%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-16	-3.885e+01	0.0000	1051.0	3.44%	801.2	2.63%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-16	-3.822e+01	0.0000	4826.0	15.79%	4296.6	14.09%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-16	-3.754e+01	0.0000	389.0	1.27%	247.5	0.81%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-16	-3.754e+01	0.0000	389.0	1.27%	247.5	0.81%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-15	-3.597e+01	0.0000	1587.0	5.19%	1288.1	4.22%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-14	-3.335e+01	0.0000	2291.0	7.50%	1944.5	6.38%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-14	-3.258e+01	0.0000	1690.0	5.53%	1396.8	4.58%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-14	-3.257e+01	0.0000	776.0	2.54%	582.0	1.91%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-14	-3.247e+01	0.0000	199.0	0.65%	110.0	0.36%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-14	-3.230e+01	0.0000	2436.0	7.97%	2085.0	6.84%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-14	-3.226e+01	0.0000	1881.0	6.15%	1572.4	5.16%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-13	-3.187e+01	0.0000	99.0	0.32%	41.1	0.13%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-13	-3.183e+01	0.0000	355.0	1.16%	230.9	0.76%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-13	-3.115e+01	0.0000	3103.0	10.15%	2714.5	8.90%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-13	-3.109e+01	0.0000	3978.0	13.01%	3541.3	11.62%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-13	-3.070e+01	0.0000	1026.0	3.36%	806.8	2.65%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-13	-3.030e+01	0.0000	1130.0	3.70%	900.5	2.95%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-12	-2.969e+01	0.0000	178.0	0.58%	97.2	0.32%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-12	-2.909e+01	0.0000	410.0	1.34%	280.5	0.92%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-12	-2.850e+01	0.0000	2773.0	9.07%	2421.5	7.94%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-11	-2.687e+01	0.0000	663.0	2.17%	500.9	1.64%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-11	-2.681e+01	0.0000	1710.0	5.59%	1442.7	4.73%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-11	-2.649e+01	0.0000	1954.0	6.39%	1669.6	5.48%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-11	-2.643e+01	0.0000	2272.0	7.43%	1965.6	6.45%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-11	-2.581e+01	0.0000	9095.0	29.75%	8537.8	28.00%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-11	-2.571e+01	0.0000	3740.0	12.24%	3355.4	11.01%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-11	-2.564e+01	0.0000	4231.0	13.84%	3824.6	12.54%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-11	-2.543e+01	0.0000	3765.0	12.32%	3381.2	11.09%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-11	-2.541e+01	0.0000	1176.0	3.85%	961.8	3.15%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-10	-2.510e+01	0.0000	722.0	2.36%	557.3	1.83%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-10	-2.474e+01	0.0000	433.0	1.42%	309.5	1.02%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-10	-2.442e+01	0.0000	353.0	1.15%	243.1	0.80%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-10	-2.410e+01	0.0000	1496.0	4.89%	1259.0	4.13%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-10	-2.371e+01	0.0000	4335.0	14.18%	3940.1	12.92%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-10	-2.343e+01	0.0000	677.0	2.21%	523.1	1.72%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-10	-2.324e+01	0.0000	263.0	0.86%	172.1	0.56%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-10	-2.318e+01	0.0000	4040.0	13.22%	3662.9	12.01%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-9	-2.301e+01	0.0000	3868.0	12.65%	3499.4	11.48%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-9	-2.236e+01	0.0000	1968.0	6.44%	1706.7	5.60%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-9	-2.200e+01	0.0000	138.0	0.45%	77.9	0.26%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-9	-2.179e+01	0.0000	2733.0	8.94%	2429.7	7.97%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-9	-2.148e+01	0.0000	244.0	0.80%	160.9	0.53%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-9	-2.091e+01	0.0000	7977.0	26.10%	7500.7	24.60%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-9	-2.074e+01	0.0000	1954.0	6.39%	1703.3	5.59%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-8	-2.066e+01	0.0000	717.0	2.35%	568.2	1.86%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-8	-2.037e+01	0.0000	10640.0	34.81%	10122.6	33.20%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-8	-1.956e+01	0.0000	1315.0	4.30%	1116.6	3.66%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-8	-1.914e+01	0.0000	1452.0	4.75%	1245.5	4.09%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-7	-1.842e+01	0.0000	1643.0	5.38%	1427.6	4.68%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-7	-1.841e+01	0.0000	3384.0	11.07%	3076.3	10.09%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-7	-1.823e+01	0.0000	2370.0	7.75%	2113.0	6.93%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-7	-1.807e+01	0.0000	1932.0	6.32%	1700.7	5.58%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-7	-1.770e+01	0.0000	4133.0	13.52%	3802.3	12.47%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-7	-1.745e+01	0.0000	256.0	0.84%	178.2	0.58%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-7	-1.685e+01	0.0000	3393.0	11.10%	3099.8	10.17%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-7	-1.653e+01	0.0000	670.0	2.19%	543.0	1.78%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-7	-1.635e+01	0.0000	1178.0	3.85%	1007.2	3.30%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-7	-1.618e+01	0.0000	3929.0	12.85%	3621.1	11.88%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-6	-1.568e+01	0.0000	2984.0	9.76%	2718.5	8.92%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-6	-1.446e+01	0.0000	518.0	1.69%	414.8	1.36%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-6	-1.441e+01	0.0000	3236.0	10.59%	2972.7	9.75%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-6	-1.388e+01	0.0000	1434.0	4.69%	1262.0	4.14%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-5	-1.379e+01	0.0000	275.0	0.90%	203.9	0.67%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-5	-1.370e+01	0.0000	1625.0	5.32%	1442.2	4.73%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-5	-1.335e+01	0.0000	2077.0	6.79%	1873.6	6.15%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-5	-1.320e+01	0.0000	769.0	2.52%	647.4	2.12%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-5	-1.307e+01	0.0000	2107.0	6.89%	1904.6	6.25%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-5	-1.299e+01	0.0000	4914.0	16.08%	4612.6	15.13%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-5	-1.296e+01	0.0000	4230.0	13.84%	3949.0	12.95%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-5	-1.264e+01	0.0000	2826.0	9.25%	2596.5	8.52%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-5	-1.216e+01	0.0000	59.0	0.19%	31.1	0.10%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-5	-1.209e+01	0.0000	645.0	2.11%	539.3	1.77%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-5	-1.186e+01	0.0000	1063.0	3.48%	927.1	3.04%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-4	-1.077e+01	0.0000	5474.0	17.91%	5189.1	17.02%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-4	-1.038e+01	0.0001	2249.0	7.36%	2065.1	6.77%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-4	-1.032e+01	0.0001	3032.0	9.92%	2820.7	9.25%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-4	-1.010e+01	0.0001	366.0	1.20%	295.4	0.97%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-4	-9.864e+00	0.0001	1305.0	4.27%	1169.8	3.84%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-4	-9.516e+00	0.0001	390.0	1.28%	319.3	1.05%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-4	-9.350e+00	0.0002	2040.0	6.67%	1875.2	6.15%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-3	-9.133e+00	0.0002	783.0	2.56%	683.1	2.24%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-3	-8.885e+00	0.0003	3088.0	10.10%	2892.3	9.49%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-3	-8.865e+00	0.0003	3403.0	11.13%	3198.8	10.49%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-3	-8.766e+00	0.0003	473.0	1.55%	398.8	1.31%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-3	-8.730e+00	0.0003	1009.0	3.30%	898.6	2.95%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-3	-8.667e+00	0.0003	608.0	1.99%	524.0	1.72%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-3	-8.456e+00	0.0004	1280.0	4.19%	1157.7	3.80%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-3	-8.331e+00	0.0005	3275.0	10.71%	3081.2	10.11%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-3	-8.104e+00	0.0006	1062.0	3.47%	953.3	3.13%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-3	-7.884e+00	0.0007	2477.0	8.10%	2313.9	7.59%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-3	-7.813e+00	0.0008	1569.0	5.13%	1439.1	4.72%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-3	-7.265e+00	0.0013	4124.0	13.49%	3925.1	12.87%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-3	-7.250e+00	0.0013	188.0	0.62%	147.6	0.48%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-6.866e+00	0.0020	1116.0	3.65%	1015.1	3.33%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-2	-6.805e+00	0.0021	1407.0	4.60%	1294.7	4.25%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-2	-6.792e+00	0.0021	903.0	2.95%	813.9	2.67%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-2	-6.455e+00	0.0029	3036.0	9.93%	2876.1	9.43%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-2	-6.311e+00	0.0033	5047.0	16.51%	4847.3	15.90%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-2	-6.194e+00	0.0037	656.0	2.15%	584.6	1.92%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-2	-5.895e+00	0.0050	296.0	0.97%	250.2	0.82%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-2	-5.787e+00	0.0056	1465.0	4.79%	1361.4	4.47%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-2	-5.727e+00	0.0059	8583.0	28.08%	8348.5	27.38%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-2	-5.570e+00	0.0069	811.0	2.65%	736.2	2.41%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-5.465e+00	0.0076	441.0	1.44%	387.4	1.27%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-4.709e+00	0.0161	1818.0	5.95%	1717.9	5.63%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-2	-4.654e+00	0.0170	20.0	0.07%	11.1	0.04%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-4.619e+00	0.0175	14403.0	47.12%	14162.5	46.45%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-4.382e+00	0.0221	1741.0	5.70%	1647.4	5.40%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-4.075e+00	0.0299	2362.0	7.73%	2258.3	7.41%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-1	-4.056e+00	0.0304	139.0	0.45%	115.8	0.38%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-3.989e+00	0.0323	1865.0	6.10%	1774.9	5.82%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-1	-3.956e+00	0.0333	4.0	0.01%	0.7	0.00%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-1	-3.913e+00	0.0346	1794.0	5.87%	1706.6	5.60%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-1	-3.906e+00	0.0347	667.0	2.18%	614.9	2.02%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-3.789e+00	0.0389	2379.0	7.78%	2280.8	7.48%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-3.732e+00	0.0410	356.0	1.16%	319.8	1.05%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.701e+00	0.0421	1310.0	4.29%	1238.9	4.06%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-3.635e+00	0.0448	2687.0	8.79%	2585.9	8.48%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-3.152e+00	0.0724	1907.0	6.24%	1830.3	6.00%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-3.121e+00	0.0743	373.0	1.22%	340.4	1.12%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.120e+00	0.0743	236.0	0.77%	210.9	0.69%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-1	-3.027e+00	0.0811	488.0	1.60%	451.4	1.48%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-2.992e+00	0.0837	49.0	0.16%	38.8	0.13%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-2.925e+00	0.0891	3267.0	10.69%	3172.0	10.40%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-1	-2.919e+00	0.0893	1364.0	4.46%	1303.5	4.28%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-2.887e+00	0.0919	2251.0	7.36%	2173.8	7.13%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-2.759e+00	0.1040	567.0	1.85%	530.1	1.74%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.757e+00	0.1040	978.0	3.20%	929.0	3.05%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-2.713e+00	0.1081	583.0	1.91%	546.9	1.79%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-2.685e+00	0.1108	323.0	1.06%	296.7	0.97%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-1	-2.576e+00	0.1231	2517.0	8.23%	2442.0	8.01%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-2.570e+00	0.1233	933.0	3.05%	888.4	2.91%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-2.530e+00	0.1279	4822.0	15.78%	4720.6	15.48%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.495e+00	0.1320	186.0	0.61%	167.2	0.55%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-2.449e+00	0.1377	1550.0	5.07%	1494.6	4.90%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-2.361e+00	0.1499	595.0	1.95%	562.5	1.84%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.282e+00	0.1615	218.0	0.71%	199.1	0.65%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.124e+00	0.1886	392.0	1.28%	368.6	1.21%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.966e+00	0.2199	2087.0	6.83%	2034.2	6.67%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.955e+00	0.2217	462.0	1.51%	438.8	1.44%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.927e+00	0.2271	826.0	2.70%	794.2	2.61%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.885e+00	0.2360	286.0	0.94%	268.4	0.88%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.854e+00	0.2426	1305.0	4.27%	1266.1	4.15%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.826e+00	0.2485	274.0	0.90%	257.4	0.84%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.814e+00	0.2507	2275.0	7.44%	2224.2	7.30%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.781e+00	0.2582	11351.0	37.13%	11240.3	36.87%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.760e+00	0.2630	332.0	1.09%	314.7	1.03%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.733e+00	0.2690	381.0	1.25%	362.9	1.19%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-1.598e+00	0.3069	160.0	0.52%	149.9	0.49%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.582e+00	0.3109	262.0	0.86%	248.2	0.81%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.441e+00	0.3566	537.0	1.76%	519.6	1.70%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.249e+00	0.4307	3702.0	12.11%	3660.3	12.01%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.228e+00	0.4383	279.0	0.91%	269.0	0.88%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.219e+00	0.4409	1454.0	4.76%	1430.1	4.69%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.191e+00	0.4519	1021.0	3.34%	1002.2	3.29%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.154e+00	0.4673	1347.0	4.41%	1326.2	4.35%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.086e+00	0.4984	113.0	0.37%	108.5	0.36%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.049e+00	0.5156	131.0	0.43%	126.1	0.41%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.010e+00	0.5340	23.0	0.08%	21.5	0.07%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-9.863e-01	0.5452	2807.0	9.18%	2783.6	9.13%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-9.774e-01	0.5482	1040.0	3.40%	1027.7	3.37%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-9.652e-01	0.5532	274.0	0.90%	268.7	0.88%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-8.778e-01	0.6017	10.0	0.03%	9.8	0.03%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-7.816e-01	0.6602	310.0	1.01%	307.2	1.01%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-7.702e-01	0.6656	3288.0	10.76%	3274.9	10.74%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.148e-01	0.7013	426.0	1.39%	424.4	1.39%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-6.762e-01	0.7265	2138.0	6.99%	2133.6	7.00%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-6.709e-01	0.7280	3514.0	11.50%	3507.0	11.50%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-6.237e-01	0.7607	5618.0	18.38%	5609.5	18.40%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-6.096e-01	0.7690	11.0	0.04%	11.3	0.04%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-5.777e-01	0.7914	112.0	0.37%	113.9	0.37%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-5.355e-01	0.8229	5294.0	17.32%	5294.8	17.37%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-5.159e-01	0.8365	1527.0	5.00%	1532.9	5.03%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-4.870e-01	0.8583	950.0	3.11%	956.9	3.14%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-4.591e-01	0.8798	53.0	0.17%	55.6	0.18%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-4.555e-01	0.8801	4564.0	14.93%	4573.3	15.00%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-3.906e-01	0.9363	155.0	0.51%	160.4	0.53%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.864e-01	0.9373	690.0	2.26%	700.7	2.30%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-3.793e-01	0.9409	1926.0	6.30%	1941.3	6.37%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-3.733e-01	0.9437	745.0	2.44%	756.5	2.48%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.715e-01	0.9437	730.0	2.39%	741.7	2.43%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-3.400e-01	0.9696	36.0	0.12%	40.0	0.13%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-3.399e-01	0.9696	17.0	0.06%	19.9	0.07%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.953e-01	1.0000	3477.0	11.38%	3504.2	11.49%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.907e-01	1.0000	94.0	0.31%	100.9	0.33%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-2.903e-01	1.0000	5371.0	17.57%	5401.6	17.72%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.707e-01	1.0000	5202.0	17.02%	5235.7	17.17%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-2.595e-01	1.0000	33.0	0.11%	37.2	0.12%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.260e-01	1.0000	328.0	1.07%	342.9	1.12%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.258e-01	1.0000	1204.0	3.94%	1229.3	4.03%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.247e-01	1.0000	1310.0	4.29%	1336.8	4.38%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.184e-01	1.0000	1918.0	6.27%	1949.9	6.40%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-2.102e-01	1.0000	3976.0	13.01%	4017.7	13.18%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.078e-01	1.0000	5057.0	16.54%	5101.5	16.73%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.059e-01	1.0000	2508.0	8.20%	2544.7	8.35%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.702e-01	1.0000	211.0	0.69%	225.3	0.74%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.552e-01	1.0000	1808.0	5.91%	1847.0	6.06%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.547e-01	1.0000	1043.0	3.41%	1074.7	3.52%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-1.512e-01	1.0000	4286.0	14.02%	4340.9	14.24%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.403e-01	1.0000	29.0	0.09%	35.1	0.12%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-1.392e-01	1.0000	906.0	2.96%	938.0	3.08%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.382e-01	1.0000	276.0	0.90%	294.2	0.96%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.252e-01	1.0000	146.0	0.48%	160.1	0.53%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.195e-01	1.0000	3139.0	10.27%	3195.1	10.48%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.169e-01	1.0000	4534.0	14.83%	4598.9	15.08%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.122e-01	1.0000	371.0	1.21%	394.4	1.29%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.098e-01	1.0000	2535.0	8.29%	2589.4	8.49%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.094e-01	1.0000	3353.0	10.97%	3413.3	11.20%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-8.749e-02	1.0000	322.0	1.05%	346.3	1.14%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-8.320e-02	1.0000	1781.0	5.83%	1834.5	6.02%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-8.307e-02	1.0000	168.0	0.55%	186.2	0.61%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-8.083e-02	1.0000	1014.0	3.32%	1056.1	3.46%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-7.162e-02	1.0000	2646.0	8.66%	2712.6	8.90%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-7.063e-02	1.0000	1341.0	4.39%	1391.6	4.56%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-5.701e-02	1.0000	1083.0	3.54%	1132.7	3.72%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.983e-02	1.0000	1330.0	4.35%	1386.9	4.55%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-4.829e-02	1.0000	1355.0	4.43%	1412.1	4.63%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-4.201e-02	1.0000	92.0	0.30%	109.9	0.36%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-3.705e-02	1.0000	746.0	2.44%	793.0	2.60%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-3.404e-02	1.0000	169.0	0.55%	193.1	0.63%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-2.208e-02	1.0000	2526.0	8.26%	2617.5	8.59%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.769e-02	1.0000	170.0	0.56%	198.1	0.65%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.729e-02	1.0000	744.0	2.43%	800.4	2.63%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.314e-02	1.0000	1767.0	5.78%	1854.4	6.08%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.144e-02	1.0000	513.0	1.68%	564.6	1.85%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.110e-02	1.0000	486.0	1.59%	536.3	1.76%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.043e-02	1.0000	7426.0	24.29%	7580.5	24.86%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-8.632e-03	1.0000	10.0	0.03%	19.4	0.06%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-8.606e-03	1.0000	43.0	0.14%	60.2	0.20%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-7.056e-03	1.0000	940.0	3.08%	1013.1	3.32%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.810e-03	1.0000	1352.0	4.42%	1443.8	4.74%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-4.181e-03	1.0000	59.0	0.19%	81.7	0.27%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.027e-03	1.0000	4906.0	16.05%	5064.2	16.61%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-3.852e-03	1.0000	328.0	1.07%	377.3	1.24%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.642e-03	1.0000	3188.0	10.43%	3330.0	10.92%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.991e-03	1.0000	124.0	0.41%	158.4	0.52%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.900e-03	1.0000	550.0	1.80%	618.7	2.03%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.324e-03	1.0000	23.0	0.08%	40.5	0.13%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.133e-03	1.0000	711.0	2.33%	792.7	2.60%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.005e-03	1.0000	415.0	1.36%	479.6	1.57%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-9.210e-04	1.0000	354.0	1.16%	414.5	1.36%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-8.930e-04	1.0000	1899.0	6.21%	2028.4	6.65%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-3.700e-04	1.0000	73.0	0.24%	105.2	0.34%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.800e-04	1.0000	610.0	2.00%	696.7	2.29%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.760e-04	1.0000	405.0	1.32%	479.4	1.57%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.290e-04	1.0000	1325.0	4.33%	1455.8	4.77%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.700e-05	1.0000	911.0	2.98%	1024.8	3.36%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-7.300e-05	1.0000	5798.0	18.97%	6045.5	19.83%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-6.600e-05	1.0000	890.0	2.91%	1004.2	3.29%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-5.900e-05	1.0000	11256.0	36.82%	11551.2	37.89%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-4.000e-05	1.0000	1477.0	4.83%	1625.4	5.33%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.000e-06	1.0000	11458.0	37.48%	11795.8	38.69%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-2.000e-06	1.0000	4060.0	13.28%	4325.7	14.19%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-2.000e-06	1.0000	4402.0	14.40%	4681.3	15.35%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-1.000e-06	1.0000	4393.0	14.37%	4675.3	15.33%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.000e-06	1.0000	1054.0	3.45%	1208.5	3.96%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.000e-06	1.0000	1957.0	6.40%	2165.0	7.10%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-0.000e+00	1.0000	188.0	0.62%	262.1	0.86%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-0.000e+00	1.0000	512.0	1.68%	628.7	2.06%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-0.000e+00	1.0000	172.0	0.56%	252.8	0.83%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-0.000e+00	1.0000	2527.0	8.27%	2794.9	9.17%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-0.000e+00	1.0000	100.0	0.33%	165.4	0.54%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-0.000e+00	1.0000	859.0	2.81%	1029.5	3.38%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-0.000e+00	1.0000	828.0	2.71%	999.7	3.28%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-0.000e+00	1.0000	68.0	0.22%	129.9	0.43%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-0.000e+00	1.0000	386.0	1.26%	522.1	1.71%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	6745.0	22.07%	7203.8	23.63%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-0.000e+00	1.0000	9778.0	31.99%	10296.0	33.77%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-0.000e+00	1.0000	303.0	0.99%	431.5	1.42%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-0.000e+00	1.0000	580.0	1.90%	752.1	2.47%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	7112.0	23.27%	7598.4	24.92%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	6151.0	20.12%	6628.8	21.74%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-0.000e+00	1.0000	769.0	2.52%	981.3	3.22%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-0.000e+00	1.0000	2346.0	7.67%	2704.6	8.87%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	6203.0	20.29%	6743.4	22.12%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-0.000e+00	1.0000	676.0	2.21%	896.3	2.94%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-0.000e+00	1.0000	7569.0	24.76%	8169.1	26.79%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-0.000e+00	1.0000	4236.0	13.86%	4729.3	15.51%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	0.000e+00	1.0000	4448.0	14.55%	5071.4	16.63%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	6441.0	21.07%	7888.4	25.87%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	5976.0	19.55%	6704.2	21.99%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	7810.0	25.55%	8790.3	28.83%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	3575.0	11.70%	4735.9	15.53%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	0.000e+00	1.0000	6183.0	20.23%	8238.4	27.02%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	0.000e+00	1.0000	3319.0	10.86%	4558.1	14.95%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	0.000e+00	1.0000	2414.0	7.90%	2853.0	9.36%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	5755.0	18.83%	7652.4	25.10%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	1078.0	3.53%	1875.1	6.15%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	0.000e+00	1.0000	1728.0	5.65%	2576.4	8.45%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	992.0	3.25%	1974.9	6.48%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	0.000e+00	1.0000	4527.0	14.81%	5366.7	17.60%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	8112.0	26.54%	8877.4	29.12%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	5967.0	19.52%	6644.4	21.79%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	0.000e+00	1.0000	6388.0	20.90%	7228.9	23.71%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	0.000e+00	1.0000	3691.0	12.08%	4336.9	14.23%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	2171.0	7.10%	2848.9	9.34%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	10433.0	34.13%	11295.1	37.05%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	0.000e+00	1.0000	2887.0	9.44%	3370.8	11.06%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	0.000e+00	1.0000	5170.0	16.91%	5869.4	19.25%