Information for 16-CAACCCGAGT (Motif 14)


Reverse Opposite:

p-value:1e-42
log p-value:-9.846e+01
Information Content per bp:1.947
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets101.3 +/- 60.8bp
Average Position of motif in Background119.5 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)3.7
Multiplicity (# of sites on avg that occur together)1.52
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0133.1_BRCA1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CAACCCGAGT
ACAACAC----

PB0024.1_Gcm1_1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAACCCGAGT----
TCGTACCCGCATCATT

PB0138.1_Irf4_2/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CAACCCGAGT-----
GNNACCGAGAATNNN

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CAACCCGAGT
NAAACCACAG-

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----CAACCCGAGT--
NNCNTGACCCCGCTCT

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:CAACCCGAGT---
---CTYRAGTGSY

PH0126.1_Obox6/Jaspar

Match Rank:7
Score:0.48
Offset:-3
Orientation:reverse strand
Alignment:---CAACCCGAGT--
CNATAATCCGNTTNT

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:8
Score:0.48
Offset:0
Orientation:forward strand
Alignment:CAACCCGAGT--
TAATCHGATTAC

PB0107.1_Ascl2_2/Jaspar

Match Rank:9
Score:0.48
Offset:-6
Orientation:forward strand
Alignment:------CAACCCGAGT
CTATCCCCGCCCTATT

PB0106.1_Arid5a_2/Jaspar

Match Rank:10
Score:0.47
Offset:-4
Orientation:forward strand
Alignment:----CAACCCGAGT---
CATACAATACGAAATAA