Information for 18-GTTGGAAACG (Motif 17)


Reverse Opposite:

p-value:1e-39
log p-value:-9.023e+01
Information Content per bp:1.971
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif0.27%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets89.4 +/- 50.1bp
Average Position of motif in Background84.1 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)3.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0152.1_NFATC2/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GTTGGAAACG
--TGGAAAA-

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GTTGGAAACG----
CTACTTGGATACGGAAT

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTTGGAAACG
AATGGAAAAT

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GTTGGAAACG-
-TTTGAAACCG

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTTGGAAACG
CSTGGGAAAD-

MA0161.1_NFIC/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTTGGAAACG
-TTGGCA---

PB0044.1_Mtf1_1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GTTGGAAACG----
NNTTTGCACACGGCCC

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTTGGAAACG
NATGTTGCAA---

MA0133.1_BRCA1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTTGGAAACG
GTGTTGN-----

MA0157.1_FOXO3/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GTTGGAAACG
--TGTAAACA