Information for 15-TATATGCG (Motif 18)


Reverse Opposite:

p-value:1e-30
log p-value:-7.073e+01
Information Content per bp:1.878
Number of Target Sequences with motif139.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif154.7
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets103.4 +/- 60.5bp
Average Position of motif in Background96.0 +/- 81.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.72
Offset:-6
Orientation:forward strand
Alignment:------TATATGCG---
ATGGGATATATCCGCCT

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.65
Offset:-8
Orientation:reverse strand
Alignment:--------TATATGCG
NNNNNNCTTTTATAN-

MA0108.2_TBP/Jaspar

Match Rank:3
Score:0.65
Offset:-8
Orientation:reverse strand
Alignment:--------TATATGCG
NNNNNNCTTTTATAN-

PB0024.1_Gcm1_1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TATATGCG-------
NNNNATGCGGGTNNNN

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TATATGCG-
GHATATKCAT

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TATATGCG-
TTTTATTRGN

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TATATGCG---
NNAATTTTATTGGNTN

MA0033.1_FOXL1/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TATATGCG--
--TATGTNTA

PB0106.1_Arid5a_2/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TATATGCG------
CATACAATACGAAATAA

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TATATGCG---
NNANTTTTATTGGNNN