Information for 12-CAGTATGAATTM (Motif 6)


Reverse Opposite:

p-value:1e-76
log p-value:-1.768e+02
Information Content per bp:1.592
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets101.0 +/- 55.5bp
Average Position of motif in Background133.9 +/- 55.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CAGTATGAATTM
GAGCACAGCAGGACA--

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CAGTATGAATTM
CCACACAGCAGGAGA--

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CAGTATGAATTM
CCACACAGCAGGAGA--

POL002.1_INR/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGTATGAATTM
TCAGTCTT-----

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CAGTATGAATTM
TGTTCCCATTGTGTACT-

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:6
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CAGTATGAATTM
NAGTTTCABTHTGACTNW

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CAGTATGAATTM
GGTCANNGTGACCTN

MA0479.1_FOXH1/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CAGTATGAATTM--
---TGTGGATTNNN

MA0442.1_SOX10/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CAGTATGAATTM
CTTTGT------

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CAGTATGAATTM
CACAGCAGGGGG--