Information for 20-CGTTGGAAACGG (Motif 11)


Reverse Opposite:

p-value:1e-51
log p-value:-1.185e+02
Information Content per bp:1.710
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif0.31%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets94.2 +/- 51.5bp
Average Position of motif in Background95.1 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0152.1_NFATC2/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CGTTGGAAACGG
---TGGAAAA--

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CGTTGGAAACGG
--TTTGAAACCG

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGTTGGAAACGG
CSTGGGAAAD--

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGTTGGAAACGG
-AATGGAAAAT-

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CGTTGGAAACGG---
CTACTTGGATACGGAAT

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CGTTGGAAACGG---
-----NHAACBGYYV

PB0044.1_Mtf1_1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CGTTGGAAACGG---
NNTTTGCACACGGCCC

MA0161.1_NFIC/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CGTTGGAAACGG
--TTGGCA----

MA0600.1_RFX2/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CGTTGGAAACGG---
GTTGCCATGGCAACCGCGG

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGTTGGAAACGG-
TACCATAGCAACGGT