Information for 22-CACATTTGTA (Motif 16)


Reverse Opposite:

p-value:1e-21
log p-value:-4.923e+01
Information Content per bp:1.980
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif0.37%
Number of Background Sequences with motif19.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets111.1 +/- 56.3bp
Average Position of motif in Background109.9 +/- 60.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.54
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0507.1_POU2F2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CACATTTGTA---
TTCATTTGCATAT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CACATTTGTA--
--CCATTGTTNY

MA0514.1_Sox3/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CACATTTGTA--
--CCTTTGTTTT

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CACATTTGTA
--CCWTTGTY

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CACATTTGTA---
---ATTTGCATAT

PH0144.1_Pou2f2/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CACATTTGTA-----
TNTAATTTGCATANNN

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CACATTTGTA---
---ATTTGCATAA

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CACATTTGTA-----
TNTAATTTGCATACNA

MA0143.3_Sox2/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CACATTTGTA
--CCTTTGTT

POL012.1_TATA-Box/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CACATTTGTA-
NNNNNNCTTTTATAN