Information for 10-CCAGTATGAATT (Motif 5)


Reverse Opposite:

p-value:1e-88
log p-value:-2.049e+02
Information Content per bp:1.657
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets99.9 +/- 54.3bp
Average Position of motif in Background96.8 +/- 49.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.57
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCAGTATGAATT
CCACACAGCAGGAGA-

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCAGTATGAATT
GAGCACAGCAGGACA-

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCAGTATGAATT
CCACACAGCAGGAGA-

PB0132.1_Hbp1_2/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CCAGTATGAATT
TGTTCCCATTGTGTACT

MA0479.1_FOXH1/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CCAGTATGAATT---
----TGTGGATTNNN

PB0195.1_Zbtb3_2/Jaspar

Match Rank:6
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CCAGTATGAATT
NNNNTGCCAGTGATTG--

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:7
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CCAGTATGAATT-
NAGTTTCABTHTGACTNW

MA0088.1_znf143/Jaspar

Match Rank:8
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------CCAGTATGAATT--
GATTTCCCATAATGCCTTGC

PB0171.1_Sox18_2/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CCAGTATGAATT------
--NNNNTGAATTCANNNC

PB0178.1_Sox8_2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CCAGTATGAATT-
NNTNTCATGAATGT