Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 12962)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 31167)	% of Background Sequences with Motif
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-458	-1.055e+03	0.0000	2652.0	20.46%	2409.2	7.73%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-440	-1.015e+03	0.0000	2219.0	17.12%	1826.8	5.86%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-320	-7.375e+02	0.0000	1717.0	13.24%	1451.2	4.66%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-79	-1.833e+02	0.0000	1665.0	12.84%	2484.5	7.97%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-76	-1.772e+02	0.0000	1983.0	15.30%	3130.9	10.05%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-58	-1.356e+02	0.0000	525.0	4.05%	572.0	1.84%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-36	-8.439e+01	0.0000	563.0	4.34%	758.3	2.43%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-31	-7.223e+01	0.0000	423.0	3.26%	545.8	1.75%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-26	-6.194e+01	0.0000	939.0	7.24%	1568.9	5.03%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-25	-5.804e+01	0.0000	811.0	6.26%	1331.4	4.27%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-23	-5.432e+01	0.0000	941.0	7.26%	1613.9	5.18%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-23	-5.310e+01	0.0000	314.0	2.42%	407.7	1.31%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-19	-4.453e+01	0.0000	1037.0	8.00%	1872.7	6.01%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-17	-3.965e+01	0.0000	2311.0	17.82%	4697.5	15.07%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-17	-3.945e+01	0.0000	811.0	6.26%	1434.1	4.60%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-16	-3.716e+01	0.0000	520.0	4.01%	855.2	2.74%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-15	-3.577e+01	0.0000	192.0	1.48%	242.7	0.78%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-15	-3.577e+01	0.0000	192.0	1.48%	242.7	0.78%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-13	-3.023e+01	0.0000	876.0	6.76%	1635.0	5.25%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-11	-2.710e+01	0.0000	343.0	2.65%	554.3	1.78%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-11	-2.642e+01	0.0000	79.0	0.61%	78.0	0.25%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-11	-2.583e+01	0.0000	81.0	0.62%	82.3	0.26%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-11	-2.563e+01	0.0000	831.0	6.41%	1576.3	5.06%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-10	-2.515e+01	0.0000	134.0	1.03%	170.2	0.55%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-10	-2.497e+01	0.0000	1311.0	10.11%	2630.4	8.44%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-10	-2.492e+01	0.0000	407.0	3.14%	693.9	2.23%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-10	-2.464e+01	0.0000	88.0	0.68%	95.4	0.31%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-10	-2.323e+01	0.0000	1017.0	7.84%	2001.6	6.42%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-9	-2.091e+01	0.0000	530.0	4.09%	973.0	3.12%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-8	-1.874e+01	0.0000	1881.0	14.51%	3993.3	12.81%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-7	-1.799e+01	0.0000	243.0	1.87%	401.8	1.29%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-7	-1.723e+01	0.0000	452.0	3.49%	836.0	2.68%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-7	-1.638e+01	0.0000	163.0	1.26%	252.9	0.81%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-6	-1.588e+01	0.0000	327.0	2.52%	584.7	1.88%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-6	-1.580e+01	0.0000	1356.0	10.46%	2845.7	9.13%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-6	-1.541e+01	0.0000	165.0	1.27%	261.0	0.84%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-6	-1.524e+01	0.0000	568.0	4.38%	1101.7	3.53%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-6	-1.498e+01	0.0000	1283.0	9.90%	2692.9	8.64%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-6	-1.473e+01	0.0000	1489.0	11.48%	3163.7	10.15%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-6	-1.459e+01	0.0000	579.0	4.47%	1131.4	3.63%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-6	-1.434e+01	0.0000	1961.0	15.13%	4250.5	13.64%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-5	-1.367e+01	0.0000	578.0	4.46%	1138.3	3.65%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-4	-1.096e+01	0.0001	222.0	1.71%	399.8	1.28%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-4	-1.026e+01	0.0002	263.0	2.03%	490.6	1.57%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-4	-1.003e+01	0.0003	247.0	1.91%	458.4	1.47%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-3	-9.011e+00	0.0007	1438.0	11.09%	3149.8	10.11%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-3	-8.818e+00	0.0008	106.0	0.82%	175.7	0.56%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-3	-8.803e+00	0.0008	234.0	1.80%	440.1	1.41%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-3	-8.687e+00	0.0009	76.0	0.59%	117.8	0.38%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-3	-8.444e+00	0.0011	437.0	3.37%	885.7	2.84%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-3	-8.428e+00	0.0011	101.0	0.78%	167.1	0.54%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-3	-8.230e+00	0.0014	1455.0	11.22%	3205.5	10.29%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-3	-8.041e+00	0.0016	2615.0	20.17%	5916.8	18.98%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-3	-7.679e+00	0.0023	109.0	0.84%	187.2	0.60%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-3	-7.455e+00	0.0028	86.0	0.66%	142.5	0.46%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-3	-7.424e+00	0.0028	216.0	1.67%	413.5	1.33%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-2	-6.903e+00	0.0047	237.0	1.83%	463.9	1.49%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-2	-6.747e+00	0.0053	885.0	6.83%	1923.9	6.17%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-2	-6.276e+00	0.0084	462.0	3.56%	969.7	3.11%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-2	-6.242e+00	0.0086	515.0	3.97%	1089.4	3.50%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-2	-5.887e+00	0.0120	890.0	6.86%	1952.3	6.26%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-2	-4.959e+00	0.0299	957.0	7.38%	2128.2	6.83%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-2	-4.644e+00	0.0403	141.0	1.09%	276.3	0.89%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-4.605e+00	0.0413	591.0	4.56%	1291.3	4.14%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-4.502e+00	0.0450	36.0	0.28%	57.9	0.19%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-4.474e+00	0.0456	514.0	3.96%	1117.1	3.58%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-4.319e+00	0.0525	1431.0	11.04%	3252.5	10.44%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-1	-4.106e+00	0.0639	1017.0	7.84%	2290.9	7.35%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-4.034e+00	0.0677	454.0	3.50%	988.1	3.17%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.880e+00	0.0779	1057.0	8.15%	2391.0	7.67%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-3.599e+00	0.1017	670.0	5.17%	1496.3	4.80%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-3.598e+00	0.1017	946.0	7.30%	2139.4	6.86%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.541e+00	0.1048	180.0	1.39%	374.4	1.20%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-3.416e+00	0.1172	36.0	0.28%	63.0	0.20%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-3.369e+00	0.1212	85.0	0.66%	166.5	0.53%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-3.236e+00	0.1366	95.0	0.73%	189.6	0.61%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-3.225e+00	0.1366	965.0	7.44%	2195.9	7.05%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-3.049e+00	0.1605	137.0	1.06%	284.2	0.91%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-1	-2.817e+00	0.1998	195.0	1.50%	418.8	1.34%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-2.747e+00	0.2115	1254.0	9.67%	2892.7	9.28%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.689e+00	0.2214	438.0	3.38%	980.9	3.15%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-2.597e+00	0.2399	88.0	0.68%	180.4	0.58%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.574e+00	0.2424	466.0	3.59%	1048.6	3.36%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-2.500e+00	0.2580	1804.0	13.91%	4205.1	13.49%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-2.399e+00	0.2820	3521.0	27.16%	8301.3	26.64%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-2.348e+00	0.2935	575.0	4.44%	1309.9	4.20%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-2.335e+00	0.2936	71.0	0.55%	145.3	0.47%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.094e+00	0.3697	104.0	0.80%	222.9	0.72%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.085e+00	0.3697	55.0	0.42%	112.3	0.36%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.964e+00	0.4117	192.0	1.48%	426.0	1.37%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.864e+00	0.4499	898.0	6.93%	2088.2	6.70%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.798e+00	0.4752	1801.0	13.89%	4237.5	13.60%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.670e+00	0.5345	522.0	4.03%	1207.4	3.87%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.637e+00	0.5463	88.0	0.68%	192.7	0.62%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.587e+00	0.5686	189.0	1.46%	427.5	1.37%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.579e+00	0.5686	841.0	6.49%	1966.8	6.31%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.529e+00	0.5897	40.0	0.31%	84.3	0.27%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.486e+00	0.6097	437.0	3.37%	1013.8	3.25%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.394e+00	0.6614	79.0	0.61%	175.3	0.56%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.301e+00	0.7188	251.0	1.94%	580.4	1.86%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.199e+00	0.7884	256.0	1.97%	595.9	1.91%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.154e+00	0.8162	298.0	2.30%	696.2	2.23%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.133e+00	0.8257	571.0	4.40%	1346.0	4.32%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.066e+00	0.8742	133.0	1.03%	308.4	0.99%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-9.069e-01	1.0000	330.0	2.55%	782.3	2.51%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-8.352e-01	1.0000	446.0	3.44%	1063.6	3.41%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-7.651e-01	1.0000	86.0	0.66%	204.4	0.66%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-7.617e-01	1.0000	1919.0	14.80%	4604.5	14.77%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-7.396e-01	1.0000	107.0	0.83%	255.2	0.82%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-7.194e-01	1.0000	300.0	2.31%	719.1	2.31%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.882e-01	1.0000	254.0	1.96%	610.1	1.96%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-6.324e-01	1.0000	917.0	7.07%	2209.5	7.09%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-6.316e-01	1.0000	998.0	7.70%	2404.9	7.72%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.994e-01	1.0000	733.0	5.65%	1769.2	5.68%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-5.952e-01	1.0000	488.0	3.76%	1179.6	3.78%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-5.835e-01	1.0000	304.0	2.34%	736.7	2.36%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-5.488e-01	1.0000	76.0	0.59%	186.3	0.60%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-4.977e-01	1.0000	1471.0	11.35%	3559.3	11.42%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.795e-01	1.0000	944.0	7.28%	2290.8	7.35%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.471e-01	1.0000	455.0	3.51%	1111.9	3.57%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.398e-01	1.0000	245.0	1.89%	602.7	1.93%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.534e-01	1.0000	59.0	0.46%	151.3	0.49%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-3.048e-01	1.0000	450.0	3.47%	1113.2	3.57%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.708e-01	1.0000	333.0	2.57%	831.9	2.67%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.564e-01	1.0000	772.0	5.95%	1904.2	6.11%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.475e-01	1.0000	336.0	2.59%	841.3	2.70%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.397e-01	1.0000	78.0	0.60%	205.0	0.66%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.320e-01	1.0000	200.0	1.54%	508.5	1.63%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.016e-01	1.0000	122.0	0.94%	317.4	1.02%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.970e-01	1.0000	562.0	4.33%	1402.5	4.50%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.885e-01	1.0000	170.0	1.31%	438.5	1.41%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.810e-01	1.0000	1338.0	10.32%	3297.7	10.58%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.766e-01	1.0000	683.0	5.27%	1702.1	5.46%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.694e-01	1.0000	97.0	0.75%	257.1	0.82%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.530e-01	1.0000	25.0	0.19%	73.9	0.24%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.378e-01	1.0000	8.0	0.06%	27.9	0.09%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.229e-01	1.0000	156.0	1.20%	411.6	1.32%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.226e-01	1.0000	450.0	3.47%	1142.1	3.66%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.152e-01	1.0000	366.0	2.82%	936.7	3.01%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.056e-01	1.0000	945.0	7.29%	2363.8	7.58%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.046e-01	1.0000	468.0	3.61%	1191.1	3.82%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.019e-01	1.0000	120.0	0.93%	323.1	1.04%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-9.667e-02	1.0000	2226.0	17.17%	5488.1	17.61%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-9.441e-02	1.0000	20.0	0.15%	63.2	0.20%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-9.211e-02	1.0000	836.0	6.45%	2101.9	6.74%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-8.523e-02	1.0000	876.0	6.76%	2202.9	7.07%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-7.593e-02	1.0000	107.0	0.83%	294.9	0.95%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-7.457e-02	1.0000	434.0	3.35%	1116.7	3.58%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-7.423e-02	1.0000	168.0	1.30%	450.1	1.44%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-6.379e-02	1.0000	256.0	1.97%	675.0	2.17%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-5.776e-02	1.0000	696.0	5.37%	1772.7	5.69%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-5.768e-02	1.0000	216.0	1.67%	576.5	1.85%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-5.541e-02	1.0000	515.0	3.97%	1325.6	4.25%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-5.140e-02	1.0000	1580.0	12.19%	3947.0	12.66%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-4.481e-02	1.0000	150.0	1.16%	412.6	1.32%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.437e-02	1.0000	275.0	2.12%	730.5	2.34%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-3.464e-02	1.0000	4.0	0.03%	20.2	0.06%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-3.354e-02	1.0000	111.0	0.86%	315.9	1.01%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-2.883e-02	1.0000	108.0	0.83%	309.0	0.99%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-2.726e-02	1.0000	1289.0	9.94%	3258.5	10.46%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-2.531e-02	1.0000	1823.0	14.06%	4571.0	14.67%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.355e-02	1.0000	191.0	1.47%	527.7	1.69%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-2.275e-02	1.0000	5.0	0.04%	26.0	0.08%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.172e-02	1.0000	7.0	0.05%	32.3	0.10%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.123e-02	1.0000	263.0	2.03%	714.0	2.29%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.905e-02	1.0000	189.0	1.46%	525.3	1.69%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.869e-02	1.0000	416.0	3.21%	1103.7	3.54%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.857e-02	1.0000	277.0	2.14%	751.0	2.41%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.642e-02	1.0000	10.0	0.08%	43.7	0.14%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.627e-02	1.0000	302.0	2.33%	817.4	2.62%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.587e-02	1.0000	60.0	0.46%	187.1	0.60%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.444e-02	1.0000	36.0	0.28%	121.6	0.39%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.225e-02	1.0000	29.0	0.22%	102.5	0.33%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-6.116e-03	1.0000	88.0	0.68%	272.1	0.87%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-5.823e-03	1.0000	3033.0	23.39%	7585.7	24.34%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.372e-03	1.0000	140.0	1.08%	413.7	1.33%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-5.264e-03	1.0000	1121.0	8.65%	2895.3	9.29%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.186e-03	1.0000	669.0	5.16%	1772.8	5.69%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-3.986e-03	1.0000	417.0	3.22%	1135.3	3.64%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-3.714e-03	1.0000	442.0	3.41%	1200.8	3.85%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.835e-03	1.0000	1677.0	12.93%	4289.5	13.76%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.760e-03	1.0000	1897.0	14.63%	4832.5	15.51%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.186e-03	1.0000	905.0	6.98%	2379.4	7.63%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.907e-03	1.0000	39.0	0.30%	143.5	0.46%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.742e-03	1.0000	206.0	1.59%	601.8	1.93%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.588e-03	1.0000	13.0	0.10%	64.0	0.21%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.537e-03	1.0000	213.0	1.64%	621.4	1.99%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.508e-03	1.0000	371.0	2.86%	1033.1	3.31%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.464e-03	1.0000	474.0	3.66%	1298.1	4.17%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-9.240e-04	1.0000	478.0	3.69%	1316.4	4.22%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-8.700e-04	1.0000	684.0	5.28%	1842.6	5.91%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.630e-04	1.0000	190.0	1.47%	569.0	1.83%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-5.980e-04	1.0000	320.0	2.47%	914.7	2.93%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-5.580e-04	1.0000	79.0	0.61%	267.2	0.86%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-5.550e-04	1.0000	2062.0	15.90%	5289.0	16.97%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-5.160e-04	1.0000	2541.0	19.60%	6469.5	20.76%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.090e-04	1.0000	2712.0	20.92%	6896.5	22.13%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.060e-04	1.0000	284.0	2.19%	833.3	2.67%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.870e-04	1.0000	1180.0	9.10%	3124.8	10.03%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.750e-04	1.0000	1691.0	13.04%	4401.1	14.12%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.440e-04	1.0000	2675.0	20.63%	6837.3	21.94%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.080e-04	1.0000	683.0	5.27%	1877.9	6.03%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.000e-05	1.0000	379.0	2.92%	1101.9	3.54%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-3.200e-05	1.0000	243.0	1.87%	744.9	2.39%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.000e-05	1.0000	1443.0	11.13%	3832.0	12.30%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.800e-05	1.0000	1282.0	9.89%	3429.4	11.00%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.600e-05	1.0000	710.0	5.48%	1977.4	6.34%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.000e-05	1.0000	663.0	5.11%	1863.1	5.98%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.000e-05	1.0000	2251.0	17.36%	5862.3	18.81%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.000e-05	1.0000	1367.0	10.54%	3656.7	11.73%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-9.000e-06	1.0000	1428.0	11.01%	3811.5	12.23%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-5.000e-06	1.0000	1141.0	8.80%	3097.5	9.94%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.000e-06	1.0000	1683.0	12.98%	4468.3	14.34%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.000e-06	1.0000	1143.0	8.82%	3118.0	10.00%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.000e-06	1.0000	373.0	2.88%	1123.1	3.60%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.000e-06	1.0000	965.0	7.44%	2669.2	8.56%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.000e-06	1.0000	650.0	5.01%	1858.0	5.96%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.000e-06	1.0000	3759.0	28.99%	9624.8	30.88%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.000e-06	1.0000	378.0	2.92%	1143.2	3.67%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.000e-06	1.0000	485.0	3.74%	1433.0	4.60%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.000e-06	1.0000	801.0	6.18%	2258.3	7.25%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.000e-06	1.0000	1006.0	7.76%	2787.4	8.94%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-0.000e+00	1.0000	1706.0	13.16%	4571.7	14.67%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-0.000e+00	1.0000	1187.0	9.16%	3258.4	10.46%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-0.000e+00	1.0000	594.0	4.58%	1734.7	5.57%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-0.000e+00	1.0000	1694.0	13.07%	4554.7	14.61%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-0.000e+00	1.0000	437.0	3.37%	1324.8	4.25%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-0.000e+00	1.0000	686.0	5.29%	1986.6	6.37%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-0.000e+00	1.0000	832.0	6.42%	2376.7	7.63%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-0.000e+00	1.0000	470.0	3.63%	1428.5	4.58%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-0.000e+00	1.0000	1001.0	7.72%	2834.8	9.10%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-0.000e+00	1.0000	677.0	5.22%	2002.4	6.42%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-0.000e+00	1.0000	863.0	6.66%	2513.9	8.07%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-0.000e+00	1.0000	2730.0	21.06%	7298.9	23.42%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	4883.0	37.66%	12599.8	40.43%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	962.0	7.42%	2806.9	9.01%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-0.000e+00	1.0000	223.0	1.72%	802.8	2.58%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-0.000e+00	1.0000	936.0	7.22%	2755.8	8.84%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-0.000e+00	1.0000	784.0	6.05%	2358.0	7.57%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-0.000e+00	1.0000	1467.0	11.32%	4147.6	13.31%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	5386.0	41.54%	13924.7	44.68%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-0.000e+00	1.0000	4923.0	37.97%	12806.0	41.09%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-0.000e+00	1.0000	1255.0	9.68%	3641.1	11.68%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	1541.0	11.89%	4388.9	14.08%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	693.0	5.35%	2171.6	6.97%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-0.000e+00	1.0000	313.0	2.41%	1117.8	3.59%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-0.000e+00	1.0000	1855.0	14.31%	5236.7	16.80%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-0.000e+00	1.0000	2092.0	16.14%	5853.1	18.78%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-0.000e+00	1.0000	3007.0	23.19%	8166.4	26.20%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	1665.0	12.84%	4794.1	15.38%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-0.000e+00	1.0000	3131.0	24.15%	8510.9	27.31%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	0.000e+00	1.0000	1753.0	13.52%	5211.3	16.72%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	3156.0	24.34%	8596.7	27.58%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	2124.0	16.38%	6181.8	19.83%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	2259.0	17.42%	6547.9	21.01%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	1794.0	13.84%	5658.3	18.16%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	0.000e+00	1.0000	1058.0	8.16%	3216.7	10.32%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	0.000e+00	1.0000	1007.0	7.77%	3085.0	9.90%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	147.0	1.13%	732.3	2.35%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	626.0	4.83%	2108.5	6.77%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	629.0	4.85%	2353.0	7.55%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	0.000e+00	1.0000	4764.0	36.75%	12594.3	40.41%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	0.000e+00	1.0000	3585.0	27.65%	10097.9	32.40%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	4409.0	34.01%	12476.4	40.03%