Information for 18-CCAGTATGAATT (Motif 13)

A G T C A G T C C G T A C T A G A C G T C T G A A C G T A C T G C T G A C G T A A C G T A C G T
Reverse Opposite:
C G T A G T C A A C G T A G C T A G T C C G T A A G C T C G T A A G T C A C G T A C T G A C T G
p-value:1e-25
log p-value:-5.876e+01
Information Content per bp:1.943
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets96.3 +/- 55.7bp
Average Position of motif in Background46.5 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.89
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0171.1_Sox18_2/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCAGTATGAATT------
--NNNNTGAATTCANNNC
 A G T C A G T C C G T A C T A G A C G T C T G A A C G T A C T G C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCAGTATGAATT-
NNTNTCATGAATGT
 A C G T A G T C A G T C C G T A C T A G A C G T C T G A A C G T A C T G C T G A C G T A A C G T A C G T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

FOXH1/MA0479.1/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CCAGTATGAATT---
----TGTGGATTNNN
 A G T C A G T C C G T A C T A G A C G T C T G A A C G T A C T G C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A

PB0068.1_Sox1_1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCAGTATGAATT----
NNNTATTGAATTGNNN
 A G T C A G T C C G T A C T A G A C G T C T G A A C G T A C T G C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCAGTATGAATT-----
NTTNTATGAATGTGNNC
 A G T C A G T C C G T A C T A G A C G T C T G A A C G T A C T G C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

ZNF143/MA0088.2/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CCAGTATGAATT-
TACCCACAATGCATTG
 A C G T A C G T A C G T A G T C A G T C C G T A C T A G A C G T C T G A A C G T A C T G C T G A C G T A A C G T A C G T A C G T
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

LIN54/MA0619.1/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCAGTATGAATT
---ATTTGAATT
 A G T C A G T C C G T A C T A G A C G T C T G A A C G T A C T G C T G A C G T A A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

Arid3b/MA0601.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCAGTATGAATT--
---ATATTAATTAA
 A G T C A G T C C G T A C T A G A C G T C T G A A C G T A C T G C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCAGTATGAATT
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C T A G A C G T C T G A A C G T A C T G C T G A C G T A A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCAGTATGAATT
-GAATATTCAT-
 A G T C A G T C C G T A C T A G A C G T C T G A A C G T A C T G C T G A C G T A A C G T A C G T
A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T