Information for 18-CGTTGGAAAC (Motif 14)

A T G C A C T G A C G T G A C T T C A G C T A G G T C A C G T A G C T A G A T C
Reverse Opposite:
C A T G C A G T C G A T A C G T A G T C A G T C C T G A T C G A T G A C A T C G
p-value:1e-23
log p-value:-5.480e+01
Information Content per bp:1.716
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets88.6 +/- 53.6bp
Average Position of motif in Background117.6 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CGTTGGAAAC-----
CTACTTGGATACGGAAT
 A C G T A C G T A T G C A C T G A C G T G A C T T C A G C T A G G T C A C G T A G C T A G A T C A C G T A C G T A C G T A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

RFX7/MA1554.1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CGTTGGAAAC-
--NTAGCAACG
 A T G C A C T G A C G T G A C T T C A G C T A G G T C A C G T A G C T A G A T C A C G T
A C G T A C G T C T G A G A C T T C G A T A C G G A T C C T G A C T G A A T G C T A C G

RFX1/MA0509.2/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CGTTGGAAAC--
TNCCATAGCAACNN
 A C G T A C G T A T G C A C T G A C G T G A C T T C A G C T A G G T C A C G T A G C T A G A T C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G

PB0158.1_Rfx3_2/Jaspar

Match Rank:4
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CGTTGGAAAC-------
ACTGACCCTTGGTTACCACAAAG
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C G T G A C T T C A G C T A G G T C A C G T A G C T A G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

RFX3/MA0798.2/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CGTTGGAAAC--
TNCCATAGCAACNN
 A C G T A C G T A T G C A C T G A C G T G A C T T C A G C T A G G T C A C G T A G C T A G A T C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGTTGGAAAC--
SCCTAGCAACAG
 A T G C A C T G A C G T G A C T T C A G C T A G G T C A C G T A G C T A G A T C A C G T A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CGTTGGAAAC-
TTGCCATGGCAACN
 A C G T A C G T A C G T A T G C A C T G A C G T G A C T T C A G C T A G G T C A C G T A G C T A G A T C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

NFATC2/MA0152.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CGTTGGAAAC
---TGGAAAA
 A T G C A C T G A C G T G A C T T C A G C T A G G T C A C G T A G C T A G A T C
A C G T A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGTTGGAAAC-
-AATGGAAAAT
 A T G C A C T G A C G T G A C T T C A G C T A G G T C A C G T A G C T A G A T C A C G T
A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T

NFATC1/MA0624.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGTTGGAAAC-
-NNTGGAAANN
 A T G C A C T G A C G T G A C T T C A G C T A G G T C A C G T A G C T A G A T C A C G T
A C G T C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T